Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b16
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0912 - 7036420-7037503,7037599-7037819                           29   1.7  
04_04_0387 + 24869594-24871480                                         29   2.9  
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693...    29   2.9  
09_03_0210 - 13509814-13510965                                         28   3.9  
01_01_0079 - 603019-603129,603302-603367,603489-603554,603681-60...    28   5.1  
02_04_0549 + 23792603-23792782,23793417-23793600,23793777-237939...    27   6.8  

>06_01_0912 - 7036420-7037503,7037599-7037819
          Length = 434

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/60 (28%), Positives = 22/60 (36%)
 Frame = -3

Query: 357 LCTDPSNNEQECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGN 178
           LC  P    Q  F   L      GT  Y  +     V  R  A  SC++ V +W    G+
Sbjct: 41  LCCSPPGGHQAVFSPLLQYFNGNGT--YSSNISSSGVEERSSAAASCDYSVGRWVRAPGH 98


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 295 RWRHEVLPEEQWSLRREVS 239
           RWR + LP EQW+L  EV+
Sbjct: 266 RWRPDELPWEQWTLSAEVA 284


>01_06_0393 +
           28968873-28968918,28969048-28969084,28969165-28969384,
           28969557-28969715,28969831-28969950,28972154-28972240,
           28972329-28972418,28972516-28972602,28972761-28972877,
           28972945-28973028,28973585-28975324,28975670-28975816,
           28975998-28976431,28976523-28976667
          Length = 1170

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 177 NWGVCPNGTGALGCGNQETFWACTDVS 97
           NWG      G LGCG + ++W    VS
Sbjct: 547 NWGDGSYNVGLLGCGTEVSYWLPKKVS 573


>09_03_0210 - 13509814-13510965
          Length = 383

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
 Frame = -3

Query: 294 DGGTKYYPKSSG---RYDVRYRLPAGVSCEHCVLQWTYTAG-----NNWG 169
           DG   + PKSS    +Y        G  CE C   W+Y  G      NWG
Sbjct: 321 DGELAFVPKSSSSNTKYSTMGDHSNGTCCEKCADVWSYKLGQQETRENWG 370


>01_01_0079 -
           603019-603129,603302-603367,603489-603554,603681-603824,
           603932-604429
          Length = 294

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 498 YDDSPPRPHELGGAYGNGV 442
           YDD P  P E+ G +GNGV
Sbjct: 20  YDDEPSMPLEILGYHGNGV 38


>02_04_0549 +
           23792603-23792782,23793417-23793600,23793777-23793910,
           23793997-23794182,23794709-23794783
          Length = 252

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -3

Query: 330 QECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTA 184
           ++C + YL   E  G+  +     ++ ++  L  G+  + CVL +  +A
Sbjct: 137 KDCIDGYLGAFEKDGSNVFSDWVAKFQIKTVLVLGICTDFCVLDFASSA 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,966
Number of Sequences: 37544
Number of extensions: 407811
Number of successful extensions: 1225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)