Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b16
         (515 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF263835-1|AAF73446.1|  861|Homo sapiens voltage-gated potassium...    30   4.2  

>AF263835-1|AAF73446.1|  861|Homo sapiens voltage-gated potassium
           channel KCNQ5 protein.
          Length = 861

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 86  TGLIETSVHAQNVS*FPHPRAPVPLGQTPQLLPAVYVHCRTQCSHETPAG 235
           + ++ T+  A  ++  P P AP  L Q P  LPA+    R +  H  PAG
Sbjct: 653 SAVVATNTIANQINTAPKPAAPTTL-QIPPPLPAIKHLPRPETLHPNPAG 701


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,431,594
Number of Sequences: 237096
Number of extensions: 2048922
Number of successful extensions: 5326
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5325
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)