Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b16
         (515 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118980-1|AAM50840.1|  219|Drosophila melanogaster LP01886p pro...   166   2e-41
AE014297-2773|AAF55752.2|  219|Drosophila melanogaster CG4367-PA...   166   2e-41
BT011531-1|AAS15667.1|  233|Drosophila melanogaster LP24064p pro...   141   4e-34
AE014297-2774|AAF55754.1|  233|Drosophila melanogaster CG4362-PA...   141   4e-34
AY119122-1|AAM50982.1|  304|Drosophila melanogaster RE24790p pro...   140   8e-34
AE014298-712|AAF46012.2|  285|Drosophila melanogaster CG15786-PA...   140   8e-34
AE014297-1924|AAF55118.1|  868|Drosophila melanogaster CG3837-PA...    28   8.6  

>AY118980-1|AAM50840.1|  219|Drosophila melanogaster LP01886p
           protein.
          Length = 219

 Score =  166 bits (403), Expect = 2e-41
 Identities = 77/163 (47%), Positives = 105/163 (64%), Gaps = 3/163 (1%)
 Frame = -3

Query: 513 ICGDPYDDSPPRPHELGGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCT-DPSN 337
           +CGD +    PRP+ELGG YG+GVIV  ++     +  V+ITA H GY+ F +C  D + 
Sbjct: 58  LCGDDWSLEQPRPNELGGKYGSGVIVKSFAGVDEAEINVKITANHLGYFRFHICDLDENG 117

Query: 336 NEQE-CFEKYLLELEDGGTKYYPKSS-GRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVC 163
           +E E CF +Y L   DG  KYY  ++ G   V  +LP+ ++C HCVL+WTYTAGNNWGVC
Sbjct: 118 SESEDCFNQYPLNFTDGSQKYYINTTTGDIPVTVKLPSDLNCIHCVLRWTYTAGNNWGVC 177

Query: 162 PNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPIRVADDK 34
            +GTGA+GCG QETF  C D+S+     S+    +P+ VA+ K
Sbjct: 178 EDGTGAMGCGAQETFINCADISVLSSARSII-QEVPVEVAESK 219


>AE014297-2773|AAF55752.2|  219|Drosophila melanogaster CG4367-PA
           protein.
          Length = 219

 Score =  166 bits (403), Expect = 2e-41
 Identities = 77/163 (47%), Positives = 105/163 (64%), Gaps = 3/163 (1%)
 Frame = -3

Query: 513 ICGDPYDDSPPRPHELGGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCT-DPSN 337
           +CGD +    PRP+ELGG YG+GVIV  ++     +  V+ITA H GY+ F +C  D + 
Sbjct: 58  LCGDDWSLEQPRPNELGGKYGSGVIVKSFAGVDEAEINVKITANHLGYFRFHICDLDENG 117

Query: 336 NEQE-CFEKYLLELEDGGTKYYPKSS-GRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVC 163
           +E E CF +Y L   DG  KYY  ++ G   V  +LP+ ++C HCVL+WTYTAGNNWGVC
Sbjct: 118 SESEDCFNQYPLNFTDGSQKYYINTTTGDIPVTVKLPSDLNCIHCVLRWTYTAGNNWGVC 177

Query: 162 PNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPIRVADDK 34
            +GTGA+GCG QETF  C D+S+     S+    +P+ VA+ K
Sbjct: 178 EDGTGAMGCGAQETFINCADISVLSSARSII-QEVPVEVAESK 219


>BT011531-1|AAS15667.1|  233|Drosophila melanogaster LP24064p
           protein.
          Length = 233

 Score =  141 bits (342), Expect = 4e-34
 Identities = 70/145 (48%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
 Frame = -3

Query: 513 ICGDPYDDSPPRPHELGGAYGN-GVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCT-DPS 340
           +CGD + D+ PR +E+GG+ G  GV+   Y +G  I   V+IT  H GY+EF LC  D  
Sbjct: 66  LCGDNFLDAQPRANEIGGSIGGAGVVTRSYVAGNTITVGVKITTNHLGYFEFHLCNLDAF 125

Query: 339 NNE-QECFEKYLLELEDGGT-KYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGV 166
             E +ECF++  L   DG   K      G +DV   LP G++C HCVL+WTY   NNWG+
Sbjct: 126 GAESEECFDQNRLRFIDGSDRKDIGDQMGEFDVTVVLPEGLTCSHCVLRWTYVGANNWGI 185

Query: 165 CPN-GTGALGCGNQETFWACTDVSI 94
           C N G GALGCG QETF  C DVSI
Sbjct: 186 CDNSGNGALGCGPQETFKNCADVSI 210


>AE014297-2774|AAF55754.1|  233|Drosophila melanogaster CG4362-PA
           protein.
          Length = 233

 Score =  141 bits (342), Expect = 4e-34
 Identities = 70/145 (48%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
 Frame = -3

Query: 513 ICGDPYDDSPPRPHELGGAYGN-GVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCT-DPS 340
           +CGD + D+ PR +E+GG+ G  GV+   Y +G  I   V+IT  H GY+EF LC  D  
Sbjct: 66  LCGDNFLDAQPRANEIGGSIGGAGVVTRSYVAGNTITVGVKITTNHLGYFEFHLCNLDAF 125

Query: 339 NNE-QECFEKYLLELEDGGT-KYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGV 166
             E +ECF++  L   DG   K      G +DV   LP G++C HCVL+WTY   NNWG+
Sbjct: 126 GAESEECFDQNRLRFIDGSDRKDIGDQMGEFDVTVVLPEGLTCSHCVLRWTYVGANNWGI 185

Query: 165 CPN-GTGALGCGNQETFWACTDVSI 94
           C N G GALGCG QETF  C DVSI
Sbjct: 186 CDNSGNGALGCGPQETFKNCADVSI 210


>AY119122-1|AAM50982.1|  304|Drosophila melanogaster RE24790p
           protein.
          Length = 304

 Score =  140 bits (340), Expect = 8e-34
 Identities = 72/150 (48%), Positives = 89/150 (59%), Gaps = 10/150 (6%)
 Frame = -3

Query: 513 ICGDPYDDSPPRPHELGGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNN 334
           ICGD Y    PRPHE GG Y  G+I   Y++GQ ID  VE+TA H G +E  LC  P+NN
Sbjct: 100 ICGDAYHVKSPRPHEAGGQYAKGIISRYYTAGQTIDVEVELTANHYGRFEMFLC--PNNN 157

Query: 333 E-----QECFEKYLLELEDGGTKYY--PKSSGRYDV-RY--RLPAGVSCEHCVLQWTYTA 184
                 Q+CF++Y L +       Y  P+ + + D+ RY  RLP  V+C  CVLQWTY  
Sbjct: 158 PRQEATQQCFDRYPLLISGSREHRYLIPRDAKKKDIFRYKVRLPPYVTCTQCVLQWTYYT 217

Query: 183 GNNWGVCPNGTGALGCGNQETFWACTDVSI 94
            N WG C NGT A+GCG  ETF  C DV+I
Sbjct: 218 ANMWGTCANGTEAVGCGKAETFRNCADVAI 247


>AE014298-712|AAF46012.2|  285|Drosophila melanogaster CG15786-PA
           protein.
          Length = 285

 Score =  140 bits (340), Expect = 8e-34
 Identities = 72/150 (48%), Positives = 89/150 (59%), Gaps = 10/150 (6%)
 Frame = -3

Query: 513 ICGDPYDDSPPRPHELGGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNN 334
           ICGD Y    PRPHE GG Y  G+I   Y++GQ ID  VE+TA H G +E  LC  P+NN
Sbjct: 81  ICGDAYHVKSPRPHEAGGQYAKGIISRYYTAGQTIDVEVELTANHYGRFEMFLC--PNNN 138

Query: 333 E-----QECFEKYLLELEDGGTKYY--PKSSGRYDV-RY--RLPAGVSCEHCVLQWTYTA 184
                 Q+CF++Y L +       Y  P+ + + D+ RY  RLP  V+C  CVLQWTY  
Sbjct: 139 PRQEATQQCFDRYPLLISGSREHRYLIPRDAKKKDIFRYKVRLPPYVTCTQCVLQWTYYT 198

Query: 183 GNNWGVCPNGTGALGCGNQETFWACTDVSI 94
            N WG C NGT A+GCG  ETF  C DV+I
Sbjct: 199 ANMWGTCANGTEAVGCGKAETFRNCADVAI 228


>AE014297-1924|AAF55118.1|  868|Drosophila melanogaster CG3837-PA
           protein.
          Length = 868

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 231 AGVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGNQ 127
           AG  C+H  +   Y+   N  +C N  G +GC NQ
Sbjct: 242 AGKCCDHNCVTGCYS--QNCSLCANYQGRMGCVNQ 274


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,786,992
Number of Sequences: 53049
Number of extensions: 660660
Number of successful extensions: 2154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2140
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)