Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b16
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    28   4.6  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    28   4.6  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    28   4.6  
Z95559-17|CAL44975.1|  331|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z29121-2|CAA82388.2|  294|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear recep...    27   8.0  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   8.0  

>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 261 GRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGN 130
           GR D++  +  G   E   L W  T+  NW  C  G  A G  N
Sbjct: 411 GRSDIKCFID-GQLAETIELSWVVTSATNWDRCSIGVSADGTAN 453


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 261 GRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGN 130
           GR D++  +  G   E   L W  T+  NW  C  G  A G  N
Sbjct: 411 GRSDIKCFID-GQLAETIELSWVVTSATNWDRCSIGVSADGTAN 453


>U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical
           protein B0336.6 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = -3

Query: 504 DPYDDSPPRPHELGGAYGNGVIVAK---YSSGQ 415
           D  DD PP P  +GG+   GV   +   YSS Q
Sbjct: 365 DDMDDLPPPPESVGGSSAYGVFAGRTESYSSSQ 397


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 183 GNNWGVCPNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPI 52
           G++  V P G+  +  G++ET   C  +S++ + A  +G + P+
Sbjct: 794 GSDSAVSPTGSSQISSGDEET-KKCKSLSLEQISARANGNNSPM 836


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 183 GNNWGVCPNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPI 52
           G++  V P G+  +  G++ET   C  +S++ + A  +G + P+
Sbjct: 816 GSDSAVSPTGSSQISSGDEET-KKCKSLSLEQISARANGNNSPM 858


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 183 GNNWGVCPNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPI 52
           G++  V P G+  +  G++ET   C  +S++ + A  +G + P+
Sbjct: 816 GSDSAVSPTGSSQISSGDEET-KKCKSLSLEQISARANGNNSPM 858


>Z95559-17|CAL44975.1|  331|Caenorhabditis elegans Hypothetical
           protein Y41E3.19 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -3

Query: 174 WGVCPNGTGALGCGNQETFW----ACTDVSIKPVEASVSGMS 61
           +G+  N  G  GC +++ FW    + T++  +P   S+S MS
Sbjct: 151 YGLVKNSDGTNGCSSRQCFWNGENSETEICQRPRARSISEMS 192


>Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical
           protein C08F11.8 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -2

Query: 319 REIPPGIRRWRHEVLPE 269
           +EI PG+R WR EVLPE
Sbjct: 236 KEIIPGVRSWR-EVLPE 251


>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
           protein F33H12.6 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 124 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 246
           ++    +  +S  A      GCVR + D   T+DPRR  +P
Sbjct: 188 MMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLP 228


>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
           protein ZK250.9 protein.
          Length = 1466

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 124 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 246
           ++    +  +S  A      GCVR + D   T+DPRR  +P
Sbjct: 294 MMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLP 334


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
           protein Y16E11A.2 protein.
          Length = 1466

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 124 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 246
           ++    +  +S  A      GCVR + D   T+DPRR  +P
Sbjct: 294 MMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLP 334


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 124 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 246
           ++    +  +S  A      GCVR + D   T+DPRR  +P
Sbjct: 204 MMAEVEEKENSEAAKEVRHPGCVRLIFDISTTKDPRRYNLP 244


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
           protein F59H6.5 protein.
          Length = 1486

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 124 LLIPASQSSSSVGANTPVVTGCVRPL*DAMLTRDPRRKPIP 246
           ++    +  +S  A      GCVR + D   T+DPRR  +P
Sbjct: 294 MMAEVEEKENSEAAKEGRHPGCVRLIFDISTTKDPRRYNLP 334


>Z29121-2|CAA82388.2|  294|Caenorhabditis elegans Hypothetical
           protein ZK757.2 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 79  SFNGLNRNIRACPECLLIPASQSSSSVGANTPVVTGCVRP 198
           SF+  +R I A P  LL+P+S SSSSV    P+      P
Sbjct: 222 SFHLTHRPIGASPT-LLVPSSSSSSSVRGPIPLQRAHTEP 260


>U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical
           protein C44B7.4 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 79  SFNGLNRNIRACPECLLIPASQSSSSVGANTPV 177
           SFN ++ N + CP C+ +P    +S + A + +
Sbjct: 160 SFNKISDNGKYCPPCICVPNPTDASYLEAESQI 192


>AF332212-1|AAK17983.1|  231|Caenorhabditis elegans nuclear receptor
           NHR-98 protein.
          Length = 231

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 433 EVLLGTGHRHHRRDNRLPPRLLGIQTMHRPQQ*RTGMLREI-PPGI-RRWRHEVLPEEQW 260
           EVLL      ++  N L    +G+Q +  PQQ  + ++ +I   GI + W  E+L   +W
Sbjct: 90  EVLLNGSETPYQVSNVLQKLAIGLQNIRGPQQKVSQIVTKIGKEGIFKLWEEEMLRMAKW 149


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 433 EVLLGTGHRHHRRDNRLPPRLLGIQTMHRPQQ*RTGMLREI-PPGI-RRWRHEVLPEEQW 260
           EVLL      ++  N L    +G+Q +  PQQ  + ++ +I   GI + W  E+L   +W
Sbjct: 170 EVLLNGSETPYQVSNVLQKLAIGLQNIRGPQQKVSQIVTKIGKEGIFKLWEEEMLRMAKW 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,542
Number of Sequences: 27780
Number of extensions: 302858
Number of successful extensions: 887
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)