Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b16
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.81 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   1.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   10.0 

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 169 TPVVTGCVRPL*DAMLTRDPRRKPIPHVVTTTALRVI 279
           TP  T   + L  A + R+ RR P PH  T    RV+
Sbjct: 161 TPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPRVL 197


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 258 DHCSSGNTSCRHLL-IPGGISRSIPVRYCWGRC 353
           D C +  T   H L  PG + + IP   C GRC
Sbjct: 27  DECQA--TPVIHFLQYPGCVPKPIPSYACRGRC 57


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -3

Query: 204 LQWTYTAGNNWGVCPNGTGALGCGNQET 121
           L+W    G  WG  P+    +   N +T
Sbjct: 283 LKWLVNWGEQWGFLPSKDSLVFVDNHDT 310


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 188 QPVTTGVFAPTELELWDAGIRRHSGHARMFRLSPLKLQY 72
           QPV +   AP E  +      RH+    +  + P  +QY
Sbjct: 292 QPVHSAYKAPEETIISSVFTTRHNATCYLSHVDPDVVQY 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,840
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)