Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b15
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 31 0.20
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.20
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 30 0.35
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 28 1.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 26 4.3
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 26 5.7
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 5.7
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 5.7
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 7.6
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 10.0
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 30.7 bits (66), Expect = 0.20
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 455 LVAWSTLFLSHWKALRVFISLDVIAEVRA 541
L W LFL+HWK V I L ++ +V A
Sbjct: 239 LYMWGVLFLNHWKLTVVIIVLKLVQDVVA 267
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 363 ANQNTLGATYSTALRAIETTRSNLVWSQQRISEFTNYFESGYVED 229
+N TL + YS AL +ETT+ ++ S+ TNY Y ED
Sbjct: 338 SNLITLQSRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNED 382
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 29.9 bits (64), Expect = 0.35
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -2
Query: 579 SGNDDIRPQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILN 424
SG +D R +Y+A L S NEINT++ Q N++ T T +V I++
Sbjct: 636 SGYEDGR-LEYSADLASKSNRNEINTMQDVQ--ENSISHVTATQPAVKNIVD 684
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 27.9 bits (59), Expect = 1.4
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Frame = -2
Query: 555 QDYNAA--LTSAITSNEINTLRAFQWL-RNNVDQATR--TLGSVSTILNTIIGRLLNEEQ 391
Q +NA L + + I+ +WL + +V +R T V+T N + RL
Sbjct: 614 QPFNAVMWLDKMLNYSIISITSIIEWLIKQDVTIWSRSYTWSLVNTTFNKLAARLRRSVS 673
Query: 390 INEVSNWLT-ANQNTLGAT--YSTALRAIETTRSNLVWSQQRISEFTNYFESGYV---ED 229
E S+ + AN+ T +ALRA+ + + +W ++ Y ES ++ +D
Sbjct: 674 NKEDSSLINEANEEKEIVTNLLLSALRALISENAENIWVSHWLNLMLKYVESNFLSVKKD 733
Query: 228 VIEE 217
IEE
Sbjct: 734 TIEE 737
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 315 IETTRSNLVWSQQRISEFTNYFESGYVEDVI 223
IE + N+ W Q+RISEF F+ Y D++
Sbjct: 713 IENGKVNINWPQKRISEF---FQKNYDWDLL 740
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 337 CGSQGVLVGRQPVRNLIYLFLV 402
C S LVG QP++NL +L +V
Sbjct: 61 CFSPTSLVGAQPLKNLTHLIIV 82
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 353 FWLAVNQFETSFICSSLRRRPIIVFKIVETLPRVLVAWST 472
F ++N+ ++ C R PI + K+++ P +L WST
Sbjct: 2109 FITSLNKNQSRIFCF---REPIRISKLLQNFPALLSKWST 2145
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -2
Query: 492 FQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNTLGATYSTA 325
F+ LR A G ST+ T L +E+ VS +LT + YSTA
Sbjct: 318 FEGLRFQGSSAVLKEGLNSTVKKTFFDNLNSEKVCPSVSPFLTPDNIASSILYSTA 373
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 343 SHIQHGATSYRDHAVEPRLVTAEN 272
SHIQ G Y+ HA+ + T E+
Sbjct: 451 SHIQLGVAQYKTHAIAESMKTFED 474
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = -2
Query: 483 LRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNTL 346
LRN + + T+ + ++T N + G++ +EE++NE+++ L N L
Sbjct: 170 LRNAITEKTKMI-VINTPHNPL-GKIFSEEELNEIAD-LVLKHNLL 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,964
Number of Sequences: 5004
Number of extensions: 47881
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -