Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b15
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0100 - 25821606-25822349 31 1.1
05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039 29 4.5
03_05_0376 - 23598026-23598136,23598395-23598484,23598870-235989... 29 4.5
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 28 5.9
01_01_0819 - 6387000-6387300,6387685-6387843,6387925-6388100,638... 28 5.9
07_01_0715 + 5463705-5463853,5463934-5464287,5464849-5464932,546... 28 7.8
07_01_0712 - 5381641-5381667,5382107-5382261,5382917-5383006,538... 28 7.8
>02_05_0100 - 25821606-25822349
Length = 247
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/73 (34%), Positives = 29/73 (39%)
Frame = -1
Query: 364 GQPKHPGSHIQHGATSYRDHAVEPRLVTAENFRIHELLRVRLRGGCH*GDHRGTAYCSPD 185
G P H G H QHG + R AV P A+ R +RGG G RG P
Sbjct: 111 GHPWHEGPHPQHGFQASRSSAVGPIRNIAK--------RAVVRGGGGGGTFRGRGGRFPS 162
Query: 184 RPTNRSSSCHPCT 146
R S + P T
Sbjct: 163 RRPGASGAAAPET 175
>05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039
Length = 218
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/71 (33%), Positives = 34/71 (47%)
Frame = -1
Query: 265 IHELLRVRLRGGCH*GDHRGTAYCSPDRPTNRSSSCHPCTRFSERRSPKLYHTDHHFSCQ 86
+ ELLR +RG + D +G ++CS P + SS R RR K+ DH SC+
Sbjct: 28 LQELLRT-VRGRGNEQDSKGRSHCSRSAPASPSSERD--QRMKRRR--KMIEADH--SCE 80
Query: 85 FGIILFVHKLN 53
G K+N
Sbjct: 81 DGEEKVPEKMN 91
>03_05_0376 -
23598026-23598136,23598395-23598484,23598870-23598935,
23599743-23599811,23599890-23599998,23600135-23600232,
23600339-23600420,23601163-23601242,23601346-23601516,
23601671-23601735,23601842-23601986,23602072-23602245,
23602498-23602572,23602831-23602959,23603295-23603432,
23603509-23603610,23604008-23604112,23604282-23604399,
23605752-23605909,23606159-23606261,23606515-23606582,
23606940-23607016,23608635-23608806
Length = 834
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 489 QWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNTL 346
QW N+D R L S+ T+ I+ L I+ V L A +NT+
Sbjct: 97 QWTMRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTV 144
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = -2
Query: 579 SGNDDIRPQDYNAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILN 424
S DD + + +++ +N++NT ++Q L++ + +A R + S +L+
Sbjct: 704 SDQDDWGTKAFPGIVSAIDKANKLNTTESWQLLQHEIYRAARAVSKASAVLD 755
>01_01_0819 -
6387000-6387300,6387685-6387843,6387925-6388100,
6389293-6389476,6389565-6389875
Length = 376
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -2
Query: 546 NAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWL 367
NA T S +++ L ++ NV + I+N GR+L + I++ NWL
Sbjct: 144 NARTTVTPASGKVDPLTTARFEEFNVTIVYYLTHYLVDIVNEKAGRVLKLDAIDQARNWL 203
Query: 366 TAN 358
+A+
Sbjct: 204 SAD 206
>07_01_0715 +
5463705-5463853,5463934-5464287,5464849-5464932,
5465170-5465270,5465603-5465665,5466198-5466287,
5466390-5466479,5467135-5467289,5467729-5467755
Length = 370
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = -2
Query: 546 NAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSN 373
+++L +AIT +T+ + + AT+T ST+L T+IG +++ + + +S+
Sbjct: 250 SSSLVAAITQTMFSTITT-DTENSGIASATKTGVPASTVLQTLIGTMISPGKKSGISS 306
>07_01_0712 -
5381641-5381667,5382107-5382261,5382917-5383006,
5383109-5383198,5383731-5383793,5384126-5384226,
5384464-5384547,5385109-5385462,5385543-5385691
Length = 370
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = -2
Query: 546 NAALTSAITSNEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSN 373
+++L +AIT +T+ + + AT+T ST+L T+IG +++ + + +S+
Sbjct: 250 SSSLVAAITQTMFSTITT-DTENSGIASATKTGVPASTVLQTLIGTMISPGKKSGISS 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,414
Number of Sequences: 37544
Number of extensions: 340771
Number of successful extensions: 937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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