Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b14
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    33   0.048
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    31   0.11 
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    28   1.0  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   1.0  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.4  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   2.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.4  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   3.1  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.6  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   9.6  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   9.6  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -1

Query: 611 KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDY 432
           +L  S  +L ++      S  S  S L+ +  +E +    +  V++ CE  F  +    Y
Sbjct: 144 ELNFSTEELSSFDTTLLNSDTSKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSY 203

Query: 431 LSGEFLDEQYKGQRD-LAGKASTLKKMMDK 345
           L      E  KG+ D L  + + LK+ +DK
Sbjct: 204 LKENLKSELRKGRLDELMCENTALKEKIDK 233


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 464 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 351
           S   DYHL++ L      E YK QR   GK   LK+++
Sbjct: 31  SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 598 P*PTSSRTGPPQTRRGRAAHQPSSTPSSWRV 506
           P PT+     P+  RG+A ++PS    +W++
Sbjct: 337 PVPTNVVKANPRVNRGKAGYEPSENIINWKI 367


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 530 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 384
           E   +L   V N I  ++KTC +S ND  ++  DY+S +    + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 539 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 402
           S L+   K +S+  N IR +I   E++    H    +S  FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -3

Query: 495 QHPGGHQDLREQ---LQRLPPGRLFVRG--IPRRTVQGPTRPRRQGLDPQEDD-GQTRRP 334
           Q PG  Q +  Q   +Q + P R  ++    P+RT   P  P+R G+ PQ     Q   P
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAP 637

Query: 333 RRVHLRQETPR 301
           +R  ++   P+
Sbjct: 638 QRTGMQPMMPQ 648



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 468 REQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 301
           R  +Q + PG L     P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 516 RTGMQPMMPG-LQQPMAPQRTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQ 571



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 495 QHPGGHQDLREQLQRLPPGRLFVRGI-PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVH 322
           Q  G    +    Q + P R  ++ + P+RT   P  P+R G+ PQ     Q   P+R  
Sbjct: 648 QRTGMQPQMPGMQQPMAPQRTGMQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTG 707

Query: 321 LRQETPR 301
           ++   P+
Sbjct: 708 MQPMMPQ 714



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 417 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 301
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 637 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 676



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 417 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 301
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 703 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 742



 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 417 PRRTVQGPTRPRRQGLDPQEDD-GQTRRPRRVHLRQETPR 301
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 560 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQ 599



 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 417 PRRTVQGPTRPRRQGLDPQEDDG 349
           P+RT   P  P+R G+ PQ   G
Sbjct: 731 PQRTGMQPMAPQRTGMQPQMTGG 753


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 501 HQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 391
           H QH   H+  +E L+   PG +     P  + Q PT
Sbjct: 196 HHQHIQAHEMAQESLETRNPGNISSSSAPLASDQSPT 232


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 148 LVFYYKHAFY*RMHRFFLIVYSSVNYKQIWRPWRV 44
           L F   + +Y  +   F I YS      IW PWRV
Sbjct: 662 LFFLDTYLWYMLISTMFSIAYSFYMGSAIWTPWRV 696


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 518 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 405
           ++E DV  S++        +  DYH    LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 303  RIERINILHVTPPLRSNPF*NVTSKKI 223
            ++ R+NI HV+ P+ S+ F +  SK I
Sbjct: 1213 KVGRLNINHVSEPIDSDEFADYLSKSI 1239


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 270  PPLRSNPF*NVTSKKIWRKIVLCNN 196
            P LRS+P  + T+KK    ++LC N
Sbjct: 1631 PGLRSDPAESATNKKASEFVILCFN 1655


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 271 RYMQNIYTFNPRSFLSKMNSP 333
           R ++ IY  NP+SFL+   +P
Sbjct: 63  RELERIYEMNPKSFLTLRRTP 83


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -1

Query: 641 KLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVI 477
           +L DY+L R +L  SV   +  +  +  ++      +   LKLE+ + ++ R ++
Sbjct: 584 ELFDYILARRRLEDSVACRLFAQLISGVAYLHSRGVVHRDLKLENILLDTNRNIV 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,492
Number of Sequences: 5004
Number of extensions: 52328
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)