Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b14
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 62 3e-10
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 48 8e-06
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 36 0.025
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 36 0.025
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 36 0.025
L10986-8|AAA28013.2| 286|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 6.7
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ... 27 8.9
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 62.1 bits (144), Expect = 3e-10
Identities = 40/116 (34%), Positives = 61/116 (52%)
Frame = -1
Query: 656 REHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVI 477
REHAT+L+ +RG G V L + P N W + A E AL LE S+ ++
Sbjct: 59 REHATELMRVQNLRG---GRVV-LQDIQKPENDEWGTALKAFEAALALEKFNNESLLKLH 114
Query: 476 KTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKK 309
T + ND HL D++ ++LDEQ K + A + LK++ +GE++FDK+
Sbjct: 115 STA-GNHNDAHLTDFIEEKYLDEQVKSINEFARMVANLKRV---GPGVGEYVFDKE 166
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 47.6 bits (108), Expect = 8e-06
Identities = 35/116 (30%), Positives = 56/116 (48%)
Frame = -1
Query: 656 REHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVI 477
R HAT+L+ +RG G V + + P W + A E AL LE S+ ++
Sbjct: 59 RGHATELMRIQAVRG---GRVA-MQNIQKPEKDEWGTVLEAFEAALALERANNASLLKLH 114
Query: 476 KTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKK 309
E ND HL +Y+ ++L+EQ + A + +K+ LGE++FDK+
Sbjct: 115 GIAEQR-NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR---AGPGLGEYLFDKE 166
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -3
Query: 537 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 361
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1949 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2008
Query: 360 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 250
R P L Q ++ + ++ H+ + P
Sbjct: 2009 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2046
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -3
Query: 537 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 361
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1971 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2030
Query: 360 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 250
R P L Q ++ + ++ H+ + P
Sbjct: 2031 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2068
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -3
Query: 537 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 361
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 792 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 851
Query: 360 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 250
R P L Q ++ + ++ H+ + P
Sbjct: 852 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 889
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -3
Query: 537 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 361
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 770 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 829
Query: 360 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 250
R P L Q ++ + ++ H+ + P
Sbjct: 830 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 867
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -3
Query: 537 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 361
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1949 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2008
Query: 360 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 250
R P L Q ++ + ++ H+ + P
Sbjct: 2009 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2046
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -3
Query: 537 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 361
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1971 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2030
Query: 360 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 250
R P L Q ++ + ++ H+ + P
Sbjct: 2031 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2068
>L10986-8|AAA28013.2| 286|Caenorhabditis elegans Hypothetical
protein F10E9.2 protein.
Length = 286
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 441 GRLFVRGIPRRTVQGPTRPRRQGLDPQEDDGQTRRPRRV 325
G L G R ++G TR R+G + G+TRR ++V
Sbjct: 110 GELSNNGAERGKIRGSTRATRKGSVNKSKSGRTRRHKKV 148
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 426 RGIPRRTVQGPTRPRRQGLDPQEDDGQTRRPRRVHLRQETPRIERINILHVTPPLR 259
R PRRT + P+ PRR+ + PRR R +P R PP +
Sbjct: 105 RSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPPAK 160
>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
protein Y37B11A.2 protein.
Length = 1133
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -3
Query: 501 HQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQEDDG-QTRRPRRV 325
H +PG RE+ +R GI + V PR+ + PQE D +T R
Sbjct: 70 HSSNPGLEYLWREEKERCD-----ALGIELKDVFNSYEPRKSTICPQERDMLRTARKMAK 124
Query: 324 HLRQETPRIERINILHVT 271
RQE E+++ L VT
Sbjct: 125 KFRQERCMSEQLDDLMVT 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,092
Number of Sequences: 27780
Number of extensions: 310150
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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