Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b13
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    29   3.9  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    29   3.9  
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st...    29   3.9  
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st...    29   3.9  
Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical pr...    28   5.2  

>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 471 FVISYFTSTLFKSTLQNLIRGNHSELRYWFYLS-FGLLNFI 352
           FV+ Y TS  F     NL    H+ L  +FYL    LLNF+
Sbjct: 471 FVLKYETSEHFDLESNNLSIIEHNHLDLFFYLCIISLLNFV 511


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1613

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 190 LNIKSLHIIFTQTHSKLIIDV-ANIKQHFKPLNG 288
           +N+    ++ T+T SKL+++   +IK H K +NG
Sbjct: 261 VNVNGQEVMKTETRSKLVLEENHSIKSHIKKVNG 294


>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           b protein.
          Length = 1558

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 190 LNIKSLHIIFTQTHSKLIIDV-ANIKQHFKPLNG 288
           +N+    ++ T+T SKL+++   +IK H K +NG
Sbjct: 261 VNVNGQEVMKTETRSKLVLEENHSIKSHIKKVNG 294


>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           a protein.
          Length = 1613

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 190 LNIKSLHIIFTQTHSKLIIDV-ANIKQHFKPLNG 288
           +N+    ++ T+T SKL+++   +IK H K +NG
Sbjct: 261 VNVNGQEVMKTETRSKLVLEENHSIKSHIKKVNG 294


>Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical
           protein K05C4.9 protein.
          Length = 724

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 173 AFYDLELKFAFASTVERLLNSSTIENS 93
           A  D +LK A  ST  R+LNS+T+E S
Sbjct: 289 ALMDCQLKHAVFSTEIRVLNSATLETS 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,004
Number of Sequences: 27780
Number of extensions: 249884
Number of successful extensions: 454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)