Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b11
         (255 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    29   0.13 
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    29   0.13 
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   0.30 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   0.40 
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   0.69 
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    26   0.91 
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    24   2.8  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    24   3.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   3.7  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    23   4.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   4.9  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            23   8.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    23   8.5  

>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 182 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 69
           +   L G A+Y +  T+ GR  + R     MG V +YF
Sbjct: 177 EHKSLSGTARYMSINTHLGREQSRRDDLESMGHVFMYF 214


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 182 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 69
           ++  L G A+Y +  T+ GR  + R     +G V +YF
Sbjct: 174 EKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYF 211


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.5 bits (58), Expect = 0.30
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 182 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 69
           +   L G A+Y +  T+ GR  + R     +G V +YF
Sbjct: 174 ERKSLSGTARYMSINTHLGREQSRRDDLESLGHVFMYF 211


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 0.40
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 91  ITAYVALAVFNLPLF-V*LLKYFAKPLSWDSSTEESPAILI 210
           ++A++ L   NLP + +     F + LSW SST+ +   L+
Sbjct: 288 VSAFLTLTQLNLPAYDLNFCNNFIRKLSWSSSTKSNYVSLL 328


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 0.69
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 185 VDESQLKGLAKYFNSQTNRGRLNTARATYAV-MGAVILYF 69
           +D+S LK    Y +   N  R+NT  A  A+  GA +L +
Sbjct: 205 LDDSNLKASCVYHDGSFNDTRMNTTLAVTAIDNGATVLNY 244


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 182 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 69
           D   L G A+Y +  T+ G   + R     +G V+LYF
Sbjct: 170 DNKNLTGTARYASINTHIGIEQSRRDDLESLGYVLLYF 207


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 171 AQRLSKILQQSDKQRKIKYGQSH 103
           A+R SK+ ++SDK+  +   +SH
Sbjct: 103 AERESKLQEESDKETPVMLNKSH 125


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 159 SKILQQSDKQRKIKYGQSHICS 94
           SK+L+ S + +K K+G+   C+
Sbjct: 106 SKVLRDSTRTKKFKFGKEFHCA 127


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 205 GWPETLLSMNPSSKA*QNTSTVRQTEED 122
           G+P  ++S +P+SK    TS   + E+D
Sbjct: 390 GFPNKIVSFSPNSKEVTITSAPDEVEQD 417


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 182 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 69
           +   L G A+Y +  T+ G   + R     +G V++YF
Sbjct: 171 ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLVYF 208


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 75   LLHTET*IQEMNYKQNLLACFCKGC 1
            LL+T   I ++   QNL+  FC+ C
Sbjct: 1137 LLNTTLDISKLPSFQNLVTVFCQSC 1161


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 192 VSGHPDLKNYVITAQHPQN 248
           + GH  +   +I AQ+PQN
Sbjct: 174 IMGHVSILTQLIVAQNPQN 192


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 177 FIDRRVSGHPDLKNYVI 227
           F+ R++S HP+ +NY I
Sbjct: 68  FLLRQLSSHPNGRNYAI 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,263
Number of Sequences: 5004
Number of extensions: 14642
Number of successful extensions: 45
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)