Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b10
(212 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 1.0
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 24 3.1
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 3.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 23 4.2
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 23 5.5
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 23 7.3
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 23 7.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 23 7.3
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 22 9.6
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 22 9.6
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 22 9.6
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 22 9.6
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 22 9.6
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 22 9.6
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 65 KHSPPCFRHLVSFTDKS 115
+H P FRH+ S+TD S
Sbjct: 721 EHRPNAFRHMPSYTDPS 737
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 3 SLRDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTNHLH 122
+LRDSLK ++ + S N+ A +++ +H+H
Sbjct: 1407 TLRDSLKDIYTLNTGADNSSDNVEENADNLFQSSVLDHVH 1446
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 12 DSLKLLHISKIDCSSLSRNILRRASDIWSLLRTNHLHC 125
++L I + SL ++L+ S + NHLHC
Sbjct: 93 NNLNCPDIKRYILESLQDSLLKEISSLKETSTQNHLHC 130
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 45 DCSSLSRNILRRASDIW 95
DC + + +LRRAS +W
Sbjct: 852 DCVNSPKPLLRRASSLW 868
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -3
Query: 87 RKHGGECF-SKGYCSQSLIYEEA 22
R+HG ECF SK Y Y +A
Sbjct: 68 REHGNECFASKRYKDAEEFYTKA 90
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 90 CRKHGGECFSKGYCSQSL 37
C KHG EC CS+ L
Sbjct: 431 CAKHGVECAPPQTCSRLL 448
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -3
Query: 147 MCILVYGNSEDDLSVKETRCRKHGGECFSKG 55
+CIL YG ED E FS+G
Sbjct: 589 LCILEYGIVEDQSMKSNPDLNSFSKELFSRG 619
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 168 KFLLFCAMCILVYGNSEDDLSVK 100
KFL F IL GN +DL K
Sbjct: 930 KFLSFFKTTILTSGNENNDLKSK 952
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = -3
Query: 183 EHVIMKFLLFCAMCILVYGN 124
E+V++ +L ++C +Y N
Sbjct: 5 EYVLLVIILILSLCYFIYNN 24
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = -3
Query: 57 GYCSQSLIYEEASDCPE-GN 1
GYC+ Y++ + CP GN
Sbjct: 371 GYCAMESFYKKDATCPHCGN 390
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 202 SRSKLKRTRHHEVFIILCNVHFSL 131
S+ L++ R +FI+ N+ FSL
Sbjct: 585 SQDDLRKARKERLFIVNQNIPFSL 608
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 165 FLLFCAMCILVY 130
FLLFCA+ L Y
Sbjct: 210 FLLFCAIAFLAY 221
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 57 LSRNILRRASDIWSLLRTNHL 119
+ +N L SD+W LL + HL
Sbjct: 404 MDKNALNVYSDLWILLGSLHL 424
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/26 (26%), Positives = 15/26 (57%)
Frame = +3
Query: 75 RRASDIWSLLRTNHLHCFRKLKCTLH 152
+ S+ ++ +HL+ F +KC +H
Sbjct: 307 KNISETQKIVAYSHLYSFTSVKCFVH 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,781
Number of Sequences: 5004
Number of extensions: 14379
Number of successful extensions: 43
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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