Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b10
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0150 - 8816714-8817806,8817993-8818126                           27   2.1  
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999           27   2.1  
06_03_0778 - 24523780-24526353                                         26   3.6  
06_01_1153 - 9745717-9745847,9745993-9746260,9746298-9746324,974...    26   4.8  
04_03_0190 + 12448027-12450825                                         26   4.8  
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405...    25   8.3  
02_04_0270 - 21439788-21441680                                         25   8.3  

>11_02_0150 - 8816714-8817806,8817993-8818126
          Length = 408

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 180 HVIMKFLLFCAMCILVYGNSEDDLSVKETRCRKHGGECFSKGYCSQSLIYEEASDCP 10
           H++ K L  C  C LV+ N  DD    +   +KH G C     CS +   + A++ P
Sbjct: 89  HMLSKCLP-CYSCPLVHENDADDAVKSQKWWQKHCGAC----CCSPNPGRDRANEAP 140


>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
          Length = 698

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 18  LKLLHISKIDCSSLSRNI--LRRASDIWSLLRTNHLHCFRKLKCTLHK 155
           L  L   K+ CSS + ++   +RA D+W+ + T    C     C LH+
Sbjct: 367 LPKLRTLKVRCSSTTDDLEGRKRAEDLWNYIGTLISSCNLHHLCILHR 414


>06_03_0778 - 24523780-24526353
          Length = 857

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 62  EKHSPPCFRHLVSFTDKSSSLF 127
           E H+PP   HL S+TD SSS F
Sbjct: 817 EVHAPP---HLPSYTDSSSSSF 835


>06_01_1153 -
           9745717-9745847,9745993-9746260,9746298-9746324,
           9746359-9746361
          Length = 142

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 180 HVIMKFLLFCAMCILVYGNSED-DLSVKETRCRKHG 76
           H++   +  C  C+ + GNS D  L  +E +C  +G
Sbjct: 91  HIMEDSISTCHDCVSIVGNSTDVRLRAEEEKCSTYG 126


>04_03_0190 + 12448027-12450825
          Length = 932

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 36  SKIDCSSLSRNILRRASDIWSLLRTNHLHCFRKLK 140
           S+ DCS+       +  +I SLLRT   HCF+  K
Sbjct: 226 SRYDCSAWIAT--SQVYNICSLLRTTIRHCFKNTK 258


>07_01_0547 +
           4052618-4052659,4055575-4055741,4055839-4056556,
           4056678-4057114,4057241-4057315,4057490-4057673,
           4057759-4057854,4057952-4058018,4058556-4058715,
           4058808-4059199,4059254-4059300
          Length = 794

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 108 SVKETRCRKHGGECFSKG-YCSQ 43
           S K+++C K   ECF+ G YCS+
Sbjct: 471 SCKKSKCLKLYCECFAAGVYCSE 493


>02_04_0270 - 21439788-21441680
          Length = 630

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 36  SKIDCSSLSRNILRRASDIWSLLRTNHLHCFRKLK 140
           S+ D   +SRN  +R  D +SL  T+ LH  R+L+
Sbjct: 591 SEDDSYRMSRNGGQRRGDGYSLRPTSELHNSRRLR 625


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,467,271
Number of Sequences: 37544
Number of extensions: 89653
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)