Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b10
         (212 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021377-1|AAX33525.1|  540|Drosophila melanogaster LD43587p pro...    26   8.2  
AF145613-1|AAD38588.1|  516|Drosophila melanogaster BcDNA.GH0310...    26   8.2  
AE013599-3995|AAF47301.1|  540|Drosophila melanogaster CG2790-PA...    26   8.2  

>BT021377-1|AAX33525.1|  540|Drosophila melanogaster LD43587p
           protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 112 FVRKRDQMSEARRRMFLERL 53
           FVRKRD   +A RRM  ER+
Sbjct: 209 FVRKRDPRVQAYRRMLEERV 228


>AF145613-1|AAD38588.1|  516|Drosophila melanogaster BcDNA.GH03108
           protein.
          Length = 516

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 112 FVRKRDQMSEARRRMFLERL 53
           FVRKRD   +A RRM  ER+
Sbjct: 184 FVRKRDPRVQAYRRMLEERV 203


>AE013599-3995|AAF47301.1|  540|Drosophila melanogaster CG2790-PA
           protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 112 FVRKRDQMSEARRRMFLERL 53
           FVRKRD   +A RRM  ER+
Sbjct: 209 FVRKRDPRVQAYRRMLEERV 228


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,342,687
Number of Sequences: 53049
Number of extensions: 158295
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 24,988,368
effective HSP length: 50
effective length of database: 22,335,918
effective search space used: 446718360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)