Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b10
(212 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical ... 33 0.021
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 29 0.45
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 29 0.45
Z70210-9|CAE17897.1| 403|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 26 4.2
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 26 4.2
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 26 4.2
AL032644-6|CAA21671.1| 574|Caenorhabditis elegans Hypothetical ... 26 4.2
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 25 5.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 25 7.3
U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical pr... 25 7.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 25 7.3
AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical ... 25 7.3
AF016670-7|AAB66102.3| 361|Caenorhabditis elegans Hypothetical ... 25 7.3
>AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical
protein Y17D7C.1 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.021
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 204 GRVQN*SEHVIMKFLLFCAMCILVYGN 124
G V+ S+H+ FLLFC C +VYG+
Sbjct: 82 GLVETLSQHICRHFLLFCLQCRVVYGD 108
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 29.1 bits (62), Expect = 0.45
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 144 CILVYGNSEDDLSVKETRCRKHGGECFSKGYC 49
C + +G DL ++ C + GG+CF+ G C
Sbjct: 444 CPIGFGGVRCDLRLEIGICSRQGGKCFNGGKC 475
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 29.1 bits (62), Expect = 0.45
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 144 CILVYGNSEDDLSVKETRCRKHGGECFSKGYC 49
C + +G DL ++ C + GG+CF+ G C
Sbjct: 444 CPIGFGGVRCDLRLEIGICSRQGGKCFNGGKC 475
>Z70210-9|CAE17897.1| 403|Caenorhabditis elegans Hypothetical
protein K08H2.9 protein.
Length = 403
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 165 FLLFCAMCILVYGNSEDDLSVKETRCRKHGGECFSKGYCSQSLIYEE 25
FL A+C+ ++G SE + ++K T KHG G+ + +E
Sbjct: 13 FLSIFAICLYIFGFSERNYNLK-TIFDKHGKISLENGFIDTEMQNDE 58
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -3
Query: 144 CILVYGNSEDDLSVKETRCRKHGGECFSKGYC 49
C +G DL ++ C + G C++ G C
Sbjct: 311 CPSGFGGIHCDLPLQRPHCSRSNGTCYNDGRC 342
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -3
Query: 144 CILVYGNSEDDLSVKETRCRKHGGECFSKGYC 49
C +G DL ++ C + G C++ G C
Sbjct: 311 CPSGFGGIHCDLPLQRPHCSRSNGTCYNDGRC 342
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 15 SLKLLHISKIDCSSLSRNILRRASDIWSLLRTNHLHCFRKLKC 143
+L +LH+ + + + R+ R SD+ S L+ +H + FR+ C
Sbjct: 513 ALDVLHLDHNNLNEIDRDAFRSFSDLQS-LKLSH-NAFRRFSC 553
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -3
Query: 144 CILVYGNSEDDLSVKETRCRKHGGECFSKGYC 49
C +G DL ++ C + G C++ G C
Sbjct: 311 CPSGFGGIHCDLPLQRPHCSRSNGTCYNDGRC 342
>AL032644-6|CAA21671.1| 574|Caenorhabditis elegans Hypothetical
protein Y51H1A.6 protein.
Length = 574
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 135 VYGNSEDDLSVKETRCRK-HGGECFSKGYCSQSLIYE 28
+ G SE L V +K HG EC YC Q + Y+
Sbjct: 351 IVGLSERPLEVCTAFVQKTHGYECIRVKYCDQHIHYD 387
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 144 CILVYGNSEDDLSVKETRCRKHGGECFSKGYCSQSLIYEE-ASDCPE 7
CI G ++ + KE++ + G +C CS+ I E+ CPE
Sbjct: 920 CIPRPGKPKERKTEKESKLVELGDKCDKLSLCSKGAICEKGVCSCPE 966
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 129 GNSEDDLSVKETRCRKHGGECFSKGYC-SQSLIYEEASDCPEGN 1
G+ ED +V C +C S G C S + DC +G+
Sbjct: 1257 GSDEDSCAVTAESCTPDQFKCVSSGLCIPASWKCDGQQDCDDGS 1300
>U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical
protein B0244.10 protein.
Length = 628
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 177 VIMKFLLFCAMCILVYG 127
+I+K+LLFC C+++ G
Sbjct: 481 LIVKWLLFCIACLILMG 497
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 129 GNSEDDLSVKETRCRKHGGECFSKGYC-SQSLIYEEASDCPEGN 1
G+ ED +V C +C S G C S + DC +G+
Sbjct: 1257 GSDEDSCAVTAESCTPDQFKCVSSGLCIPASWKCDGQQDCDDGS 1300
>AL031633-4|CAA21022.1| 260|Caenorhabditis elegans Hypothetical
protein Y39A1A.6 protein.
Length = 260
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 51 SSLSRNILRRASDIWSLLRTNHLHCFRKLK 140
S++ + R A D W+ +R ++H F +L+
Sbjct: 195 SNIVKGARRHAHDNWNTIRYRYIHIFVRLE 224
>AF016670-7|AAB66102.3| 361|Caenorhabditis elegans Hypothetical
protein K02F6.2 protein.
Length = 361
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 114 HLHCFRKLKCTLHKIIK 164
HLH F+K+K L K IK
Sbjct: 201 HLHLFKKIKKDLSKFIK 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,948,149
Number of Sequences: 27780
Number of extensions: 85867
Number of successful extensions: 219
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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