Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b10
         (212 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   2.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   2.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   8.9  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 171 MKFLLFCAMCILVYGNSEDDLS 106
           +K LLF  +  L+   ++DD+S
Sbjct: 3   IKILLFFTILALINVKAQDDIS 24


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 167 SFYYFVQCAF*FTETVKMICP*KRPDVGSTAENV-SRKATA 48
           + YY++   F F ++  ++ P   P  G+T + +  +K+TA
Sbjct: 17  ALYYYLTSTFDFWKSRGVVGPKPVPFFGTTKDLILVKKSTA 57


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +3

Query: 117 LHCFRKLKCTLHKI 158
           L C   L C+L K+
Sbjct: 74  LQCLEDLDCSLRKL 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,387
Number of Sequences: 438
Number of extensions: 1103
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)