Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b07
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467...    30   1.1  
09_04_0188 - 15410310-15410514,15410597-15410748,15410845-154110...    29   3.4  
03_01_0314 - 2477593-2480685                                           28   4.6  
07_03_1507 - 27228032-27228742                                         28   6.0  
10_01_0230 - 2433082-2434674                                           27   8.0  
10_01_0046 - 635010-635431,635522-635684,637390-637815                 27   8.0  
07_03_1094 + 23919878-23920520,23921297-23921363,23921364-239214...    25   9.1  

>09_04_0174 +
           15346123-15346207,15346350-15346502,15346623-15346759,
           15346856-15347005,15347405-15347506,15347832-15347996,
           15348402-15348499,15348704-15348827,15349056-15349145,
           15349555-15349599,15350438-15350833
          Length = 514

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 521 IHMTGTMIVHGSILHGTCSSDAIQLEEHHEGWNWADLEELAVTSFLRPYAANPCHPCLIY 342
           +H +G  ++H  IL        I+ +EH +G +W +L ++ +    +P   N  HP  +Y
Sbjct: 243 VHRSG--LIHRKILSEP-QKYLIKNDEHFDGNSWRELFDVVIAQANKPTFYNSDHPFRVY 299


>09_04_0188 -
           15410310-15410514,15410597-15410748,15410845-15411003,
           15411062-15411367,15412508-15412535,15413174-15413290,
           15413649-15413717,15413919-15414103
          Length = 406

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 208 SVIKSISAKIFIHSSGHLGSWWGASAAV 291
           +VI ++ A  F+H   H+GS +GA+A V
Sbjct: 320 TVIATVVAAAFLHEELHIGSLFGATAIV 347


>03_01_0314 - 2477593-2480685
          Length = 1030

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 524 GIHMTGTMIVHGSILHGTCSSDAIQLEEHHEGWNW 420
           G    G  + H   +HG C  DA   EE    W W
Sbjct: 655 GAMFLGKQLYHRWYVHGGCCDDAAVEEEGSGSWPW 689


>07_03_1507 - 27228032-27228742
          Length = 236

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 395 SPRAPLDPPNSSPRDAPPTG*RRS 466
           S RAPL PP+ S   +PPT  R S
Sbjct: 47  SRRAPLSPPSPSTFGSPPTSLRTS 70


>10_01_0230 - 2433082-2434674
          Length = 530

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 489 FDSPRDLFERRYPVGGASRGLELGGSRGAR 400
           +D PR+    R+  GG   G+++ G+R  R
Sbjct: 431 WDRPREFLPERFMAGGDGEGVDITGTREIR 460


>10_01_0046 - 635010-635431,635522-635684,637390-637815
          Length = 336

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 318 SMRSSYDPMYSRRSPPPGPQMSRGMYEDFSRDTFDD 211
           +M ++Y    S+R PP GP  +    +  + DTFD+
Sbjct: 225 TMDAAYRSFLSQRCPPNGPPAALNDLDPTTPDTFDN 260


>07_03_1094 +
           23919878-23920520,23921297-23921363,23921364-23921453,
           23922220-23922284,23922372-23922470,23922851-23922992,
           23923100-23923139
          Length = 381

 Score = 24.6 bits (51), Expect(2) = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 401 RAPLDPPNSSPRDAPPTG*RRSNKSRG 481
           + P+ PP++ P D+   G RRS +  G
Sbjct: 6   KPPVPPPSTPPMDSWACGGRRSKRRGG 32



 Score = 21.0 bits (42), Expect(2) = 9.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 542 RSRRKGGGG 568
           RS+R+GGGG
Sbjct: 26  RSKRRGGGG 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,633,874
Number of Sequences: 37544
Number of extensions: 310279
Number of successful extensions: 1241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)