Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b07
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    31   0.77 
AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical ...    28   4.1  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF022985-5|AAB69974.1|  299|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    27   7.2  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    27   7.2  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    27   7.2  
AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    27   9.5  
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    27   9.5  

>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -1

Query: 506 TMIVHGSILHGTCSSDAIQLEEHHEGWNWADLEE 405
           T+ VHG I+H  C+SDA +  ++   +N +D+++
Sbjct: 785 TVNVHGKIVHSACASDAARSLDNSSFFNDSDIKK 818


>AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical
           protein Y37H9A.6 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 461 DAIQLEEHHEGWNWADLEE 405
           D +QL   H+ W W +LE+
Sbjct: 96  DDVQLSHEHQNWKWCELED 114


>AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical
           protein Y52B11A.5 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 271 WGASAAVHRIIGRSHGTHSAPQWR*IRHG 357
           WG  + VH+ +  S  TH  P+W  I HG
Sbjct: 167 WGVQSCVHQFVFPSGSTH--PRWPGIPHG 193


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 425 NWADLEELAVTSFL-RPYAA-NPCHPCLIYLHCGAEW 321
           N  +L  +  T+ + RPY A NP  PC++  HC   +
Sbjct: 527 NEPELHRIVTTAMMHRPYGAQNPHSPCMVDGHCSKRY 563


>AF022985-5|AAB69974.1|  299|Caenorhabditis elegans Hypothetical
           protein T15B7.8 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 36  KVKTLSNPFTHLQLSLHYF*NVPKVQPKYQMSFSTTILSY 155
           K KT++  F  L + L Y  NVPK  PK+     T +L Y
Sbjct: 232 KTKTITTSFQPLSI-LWYGSNVPKGVPKHTNGNETLVLCY 270


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 398 PRAPLDPPNSSPRDAPPTG 454
           PRA   PP   PR +PPTG
Sbjct: 292 PRAGSPPPPPPPRGSPPTG 310


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 398 PRAPLDPPNSSPRDAPPTG 454
           PRA   PP   PR +PPTG
Sbjct: 313 PRAGSPPPPPPPRGSPPTG 331


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 398 PRAPLDPPNSSPRDAPPTG 454
           PRA   PP   PR +PPTG
Sbjct: 298 PRAGSPPPPPPPRGSPPTG 316


>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -1

Query: 410 EELAVTSFLRPYAANPCHPCLIYL 339
           E++++  FL  + ++PC PC+++L
Sbjct: 223 EKVSLNVFLDTFLSDPCPPCIMWL 246


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -1

Query: 410 EELAVTSFLRPYAANPCHPCLIYL 339
           E++++  FL  + ++PC PC+++L
Sbjct: 223 EKVSLNVFLDTFLSDPCPPCIMWL 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,499,479
Number of Sequences: 27780
Number of extensions: 237944
Number of successful extensions: 790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)