Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b07
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.70 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   8.6  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   8.6  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   8.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   8.6  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 222 YLC*NLHTFLWTSGVLVGGFCGCT 293
           Y+C  LHT +W +G   G    CT
Sbjct: 83  YVCRVLHTTVWVAGAQRGNEQRCT 106


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 494 HGSILHGTCSSDAIQLEEHHEGWNWADLEELAV 396
           H  I HG   S ++ L  H E  +W   +E  V
Sbjct: 81  HHPIRHGRRQSRSMDLNAHREQMSWPVKKEAVV 113


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +1

Query: 193 SHSGPSVIKSISAKIFIHSSGHLGSWWGASAAVHRIIGRSHGT 321
           S S P  +           S  LG   G  A   R++GR H T
Sbjct: 358 SQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSRVLGRVHAT 400


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 327 GMGSMRSSYDPMYSRRSPPPGPQMSRG 247
           GM   ++S+D  Y +R+ P G Q  RG
Sbjct: 94  GMRGKKASFDDEYYKRA-PMGFQGMRG 119


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 327 GMGSMRSSYDPMYSRRSPPPGPQMSRG 247
           GM   ++S+D  Y +R+ P G Q  RG
Sbjct: 95  GMRGKKASFDDEYYKRA-PMGFQGMRG 120


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 327 GMGSMRSSYDPMYSRRSPPPGPQMSRG 247
           GM   ++S+D  Y +R+ P G Q  RG
Sbjct: 94  GMRGKKASFDDEYYKRA-PMGFQGMRG 119


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 327 GMGSMRSSYDPMYSRRSPPPGPQMSRG 247
           GM   ++S+D  Y +R+ P G Q  RG
Sbjct: 94  GMRGKKASFDDEYYKRA-PMGFQGMRG 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,139
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)