Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b06
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.59 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   1.0  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    28   1.4  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.2  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   5.5  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   7.3  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   9.7  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.7  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -3

Query: 465 SVYISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCV 337
           ++ + ++LL  + M+    P+++SL  S EL+S   R+F LC+
Sbjct: 773 TIPVRLSLLLPY-MSYLMRPLVMSLKSSQELVSQGLRTFELCL 814


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 281 VNGENFITVPFND-LNIKTVTHSEKLRNLNEINSPEIARDNIIGPDE 418
           ++ +N   V F+D L IK V+ S K  N+  I +P    DN+ GPD+
Sbjct: 478 LSSKNPRKVHFSDTLEIKHVSRSGKA-NIEVIPAPTEEYDNLFGPDD 523


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 347 HCALQF*YSNR*MVQL*NFHRLRFVILDCTACSLFTAHSR*LSYFYCTYIYQKL 186
           HC L   Y+N       +F+ LRF++L    C L     + L   +C   Y K+
Sbjct: 63  HCQLSSSYTNSGQKSFKSFNSLRFIVLKSKTCLL---RYKLLIKTFCCITYSKI 113


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 375 LISLRFRSF---SLCVTVLIFKSLNGTVMKFSPFTFRYFG 265
           ++S  +RS    S  +TVL+ K L+    +F+PFT  Y+G
Sbjct: 674 ILSYSWRSLKETSSLLTVLLTKCLSLFDEEFTPFTLNYYG 713


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 192 ETKDRSLQEIADSMNEKKRNVAEETK 115
           ETKD   +E   S NEK  N  E  K
Sbjct: 307 ETKDSKSEESKPSNNEKSENAVEPAK 332


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 186 KDRSLQEIADSMNEKKRNVAEETKMITNVLNDEKIIT*WTFL 61
           K+R LQ     +N  K NV  + K++  +   EK +  W F+
Sbjct: 88  KERYLQAREFELNSMKSNVNTDAKLLDFLQVQEKGVLAWHFI 129


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 461 TLSNINFNLIKYKYNEIE--NKNITATLEVANNT 556
           ++SNINF   +YK N +   N      LEV N T
Sbjct: 579 SISNINFEAPRYKTNIVHSLNNEQKYVLEVKNGT 612


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 340 RYSFNIQIVE-WYSYEIFTVYVS 275
           R SF  Q+++ WYS + FT+YV+
Sbjct: 212 RCSFYAQVIKTWYSDKNFTLYVT 234


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 278 NVNGENFITVPFNDLNIKTVTHSEKLRNLNEIN 376
           N N  N  T    DLNI+ V + EKL+N   ++
Sbjct: 35  NQNLYNIETENVKDLNIEDVDYYEKLQNFKIVD 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,385
Number of Sequences: 5004
Number of extensions: 40921
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)