Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b06
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0088 - 10538037-10539463,10539696-10539789 38 0.005
12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387 37 0.016
01_07_0304 - 42628086-42628104,42628828-42630263 36 0.022
03_02_0024 + 5079690-5081351 34 0.12
03_02_0023 + 5065962-5066079,5066179-5067614 32 0.35
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 32 0.47
12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073 31 0.61
02_05_1340 + 35797923-35799881 31 0.61
03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998... 31 0.81
09_04_0352 + 16908942-16909030,16909295-16909464,16909535-169096... 30 1.4
07_03_1046 - 23531218-23532638,23532781-23532868 30 1.4
09_04_0005 + 13612060-13612291,13612381-13612510,13612726-136129... 30 1.9
04_04_1600 + 34704527-34704758,34705393-34706777 30 1.9
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821... 29 2.5
07_03_1045 + 23528768-23528879,23528979-23530399 29 2.5
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727... 29 3.3
04_04_0593 - 26480036-26481438,26481915-26482083 29 4.3
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 29 4.3
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316... 28 5.7
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 28 7.6
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 28 7.6
>10_06_0088 - 10538037-10539463,10539696-10539789
Length = 506
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/107 (23%), Positives = 47/107 (43%)
Frame = -3
Query: 465 SVYISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSP 286
+V ++I + F + S G ++ A S E+ LR R+ V V I + +N V
Sbjct: 371 AVVLAIATVFTFVASFSIGVGPITWAYSSEVYPLRLRAQGASVGVAINRVMNAGVSMTFV 430
Query: 285 FTFRYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMNE 145
++ + G FF++ PET+ + L+EI + ++
Sbjct: 431 SLYKAITIGGAFFLFAGLAVAAATFFYLLCPETQGKPLEEIEEVFSQ 477
>12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387
Length = 487
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/104 (23%), Positives = 45/104 (43%)
Frame = -3
Query: 453 SITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFR 274
++ ++ F A S G L+ S E++ LR R V + + ++G V +
Sbjct: 384 AVAVVVAFVCAFSVGIGPLAWVYSSEILPLRLRGQGAGVGTAMNRVVSGVVTMTFISLYG 443
Query: 273 YFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMNEK 142
+ G F++Y LPET+ RSL+++ + + K
Sbjct: 444 AITMAGAFYLYAAIAAASFVFIYACLPETRGRSLEDMEELFHTK 487
>01_07_0304 - 42628086-42628104,42628828-42630263
Length = 484
Score = 36.3 bits (80), Expect = 0.022
Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 2/152 (1%)
Frame = -3
Query: 606 LSVYVGCFITKLFKRRSVLLATSS--VAVMXXXXXXXXXXXXXXXXXLDSVYISITLLTG 433
L + V F F RR +LLA++ +A + ++ +SI +
Sbjct: 278 LFILVATFTLDRFGRRPLLLASAGGMIATLVTLGLGLTVIGEDATGGGWAIAVSIASILA 337
Query: 432 FTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFRYFGLHGV 253
F S G ++ S E+ L R+ + V + + +G + + + G
Sbjct: 338 FVAFFSIGLGPITWVYSSEIFPLHLRALGCALGVGLNRVTSGVISMTFLSLSKAITIGGS 397
Query: 252 FFIYGXXXXXXXXXXXXXLPETKDRSLQEIAD 157
FF+Y LPET+ R+L+++ +
Sbjct: 398 FFLYAGVASLAWLFFFTYLPETRGRTLEQMGE 429
>03_02_0024 + 5079690-5081351
Length = 553
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/99 (23%), Positives = 43/99 (43%)
Frame = -3
Query: 462 VYISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPF 283
V +SI ++ F + S G ++ S E+ LR R+ + + + ++G V
Sbjct: 421 VGLSIAMVLVFVASFSIGMGPIAWVYSSEIFPLRLRAQGCALGTAMNRVVSGAVSMSFIS 480
Query: 282 TFRYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQE 166
++ G F++Y LPET+ RSL++
Sbjct: 481 LYKAITFAGSFYLYAGIAAAGWVFMFFFLPETQGRSLED 519
>03_02_0023 + 5065962-5066079,5066179-5067614
Length = 517
Score = 32.3 bits (70), Expect = 0.35
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -3
Query: 456 ISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNG-TVMKFSPFT 280
ISI + F + +SG ++ + E+ +R R+ + + + + ++G T M F +
Sbjct: 389 ISIAAMLSFVASFASGLGPVAWVYTSEIYPVRLRAQAAAIGTGLNRLMSGATTMSFLSLS 448
Query: 279 FRYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQE 166
+ G F++Y LPETK +SL++
Sbjct: 449 -NAITIAGSFYLYASIAAAGWVFMYFFLPETKGKSLED 485
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/96 (21%), Positives = 42/96 (43%)
Frame = -3
Query: 450 ITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFRY 271
+ + F A S+G ++ A + E++ LR R+ + +++ + G +
Sbjct: 370 VASVVAFVAAFSAGLGPMTAAYTAEVLPLRLRAQGASLGIVVNRLTCGVMSMTFISVAGG 429
Query: 270 FGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEI 163
+ G FF+Y LPET+ RSL+++
Sbjct: 430 ITMVGFFFLYAGVAAAACVFVHARLPETRGRSLEDM 465
>12_02_0509 - 19829360-19830400,19831475-19831821,19831920-19832073
Length = 513
Score = 31.5 bits (68), Expect = 0.61
Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 5/161 (3%)
Frame = -3
Query: 630 LILDTVTVLSVYVGCFITKLFKRRSVLLATS---SVAVMXXXXXXXXXXXXXXXXXLDSV 460
++L S+ V F+ RR +LL+++ +V+++ +
Sbjct: 339 VLLGATKTASIVVPLFLADRLGRRPMLLSSAGGMAVSLLVLGFSLRVSSSSGSGSEWWAA 398
Query: 459 YISITLLTGF--TMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSP 286
S+ F T ++ GP+I E++ LR R+ + + ++ V
Sbjct: 399 ATSVAAAAAFMATFSLGFGPVIWMYG--SEILPLRLRAQGTGIGTAANRVMSAAVGMSFI 456
Query: 285 FTFRYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEI 163
+ G+ G F+++ LPETK RSL+E+
Sbjct: 457 SLYEAAGMAGTFYLFAACSAAAWVFVYACLPETKGRSLEEM 497
>02_05_1340 + 35797923-35799881
Length = 652
Score = 31.5 bits (68), Expect = 0.61
Identities = 27/101 (26%), Positives = 35/101 (34%)
Frame = -3
Query: 450 ITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFRY 271
+ L F M P IL E+ R R + + L F + V P
Sbjct: 539 VVYLCCFVMGFGPIPNILC----AEIFPTRVRGLCIAICSLAFWLADIAVTYTLPVMLAS 594
Query: 270 FGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMN 148
GL G+F IY +PETK L+ I D N
Sbjct: 595 LGLAGLFAIYAAVCCVALVFVALRVPETKGLPLEVIIDFFN 635
>03_03_0040 -
13999040-13999179,13999524-13999638,13999759-13999818,
14000007-14000060,14000274-14000333,14000418-14000480,
14000552-14000595,14000671-14000755,14000904-14001028,
14001368-14001432,14001460-14001518,14001678-14001743,
14001870-14001935,14002019-14002105,14002168-14002257,
14002378-14002440,14003153-14003419
Length = 502
Score = 31.1 bits (67), Expect = 0.81
Identities = 22/111 (19%), Positives = 48/111 (43%)
Frame = -3
Query: 456 ISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTF 277
+++T + + A S G + + E+ S+ ++ + L+ L + +S
Sbjct: 392 LALTGILVYIGAYSIGMGPVPWVVMSEIFSIDMKAIGGSLVTLV-SWLGSFAISYSFSFL 450
Query: 276 RYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMNEKKRNVAE 124
+ G FF++ +PETK R+L+EI DS+ + + + +
Sbjct: 451 MDWSSAGTFFMFSAASLITILFVVMVVPETKGRTLEEIQDSLIDSRSRLRD 501
>09_04_0352 +
16908942-16909030,16909295-16909464,16909535-16909608,
16909828-16909916,16910378-16910492,16910642-16910839
Length = 244
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/103 (29%), Positives = 46/103 (44%)
Frame = -3
Query: 456 ISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTF 277
I+ TLL FT AI +GP ++ I EL R RS + + + N V +
Sbjct: 136 ITGTLLYIFTFAIGAGP--VTGIIIPELSGARTRSKVMGFSFTVHWICNFLVGLYFLELV 193
Query: 276 RYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMN 148
+ G+ V+ +G + ETK RSL+EI S++
Sbjct: 194 KKLGVGAVYAGFGGVSFLSALFAYNFIVETKGRSLEEIEMSLS 236
>07_03_1046 - 23531218-23532638,23532781-23532868
Length = 502
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/87 (25%), Positives = 36/87 (41%)
Frame = -3
Query: 423 AISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFRYFGLHGVFFI 244
++ GPM S + E+ LR R+ V V + +G + + G FF+
Sbjct: 390 SVGLGPM--SGVYTSEIFPLRARALGFAVAVACNRVTSGVISMTFLSLSSAITIGGSFFL 447
Query: 243 YGXXXXXXXXXXXXXLPETKDRSLQEI 163
Y LPET+ ++L+EI
Sbjct: 448 YAAISSLAWVFFFTRLPETRGQTLEEI 474
>09_04_0005 +
13612060-13612291,13612381-13612510,13612726-13612926,
13613086-13613185,13613513-13613559,13613871-13613964,
13614042-13614192,13614777-13614923,13614994-13615067,
13615288-13615376,13615840-13615954,13616104-13616301
Length = 525
Score = 29.9 bits (64), Expect = 1.9
Identities = 30/103 (29%), Positives = 46/103 (44%)
Frame = -3
Query: 456 ISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTF 277
I+ TLL FT AI +GP ++ I EL R RS + + + N V +
Sbjct: 417 ITGTLLYIFTFAIGAGP--VTGIIIPELSGARTRSKVMGFSFTVHWICNFLVGLYFLELA 474
Query: 276 RYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMN 148
+ G+ V+ +G + ETK RSL+EI S++
Sbjct: 475 KKLGVGAVYAGFGGVSLLSALFAYNFIVETKGRSLEEIEMSLS 517
>04_04_1600 + 34704527-34704758,34705393-34706777
Length = 538
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/100 (21%), Positives = 41/100 (41%)
Frame = -3
Query: 462 VYISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPF 283
+ ++I + G S G + +S E+ LR RS + + ++ + +G V
Sbjct: 409 IAVAILTVCGDVAFFSVGIGPICWVMSSEIFPLRLRSQAAALGAVMNRVTSGAVAMSFLS 468
Query: 282 TFRYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEI 163
R + G F ++ +PET ++L+EI
Sbjct: 469 VCRAISVAGAFSVFAVISALSVVFVYRYVPETSGKTLEEI 508
>11_06_0528 -
24681630-24681751,24681911-24682025,24682134-24682193,
24682454-24682513,24682606-24682668,24682752-24682798,
24682884-24683049,24683136-24683228,24683306-24683370,
24683462-24683537,24683644-24683709,24684114-24684203,
24684359-24684421,24684548-24684670
Length = 402
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 285 FTFRYF---GLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMN 148
F F +F G FF++ +PETK ++L+EI SMN
Sbjct: 351 FAFNFFMSWSSSGTFFLFALVCAVAILFIVKIVPETKGKTLEEIQASMN 399
>07_03_1045 + 23528768-23528879,23528979-23530399
Length = 510
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/102 (20%), Positives = 42/102 (41%)
Frame = -3
Query: 465 SVYISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSP 286
++ +SI + S G ++ S E+ L+ R+ + V + +G +
Sbjct: 381 AIGLSIASTLAYVAFFSIGLGPITWVYSSEIFPLQVRALGCSLGVAANRVTSGVISMTFL 440
Query: 285 FTFRYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIA 160
+ + G FF+Y LPET+ R+L+E++
Sbjct: 441 SLSKAITIGGSFFLYSGIAALAWVFFYTYLPETRGRTLEEMS 482
>02_02_0155 +
7272563-7272630,7272934-7273031,7273491-7274057,
7275121-7276085,7276201-7276388,7276497-7276938
Length = 775
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = -3
Query: 387 ISGELISLRFRSFSLCVTVLIFKSLNGTVMKFS-PFTFRYFGLHGVFFIYGXXXXXXXXX 211
+ E+ R R + + L F + ++ +S P GL GVF IY
Sbjct: 685 LCAEIFPTRVRGICIAICALTFW-IGDIIVTYSLPVMLNAIGLAGVFGIYAVVCSIAFVF 743
Query: 210 XXXXLPETKDRSLQEIAD 157
+PETK L+ I +
Sbjct: 744 VFLKVPETKGMPLEVITE 761
>04_04_0593 - 26480036-26481438,26481915-26482083
Length = 523
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/87 (22%), Positives = 39/87 (44%)
Frame = -3
Query: 423 AISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFRYFGLHGVFFI 244
+I GP + +S E+ LR R+ + + + + +G V R + G+FF+
Sbjct: 405 SIGMGP--ICWVLSSEIFPLRLRAQASALGQVGGRVSSGLVSMSFLSMARIISVAGMFFV 462
Query: 243 YGXXXXXXXXXXXXXLPETKDRSLQEI 163
+ +PETK ++L++I
Sbjct: 463 FAVISTVSVAFVYFCVPETKGKTLEQI 489
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 349 FTVRYSFNIQIVEWYSYEIFTVYVSLFWTARRVLY 245
F +++ F ++IV W + Y +FW+A + Y
Sbjct: 468 FVIKF-FLLEIVAWVMFIFLETYTRMFWSAESLYY 501
>10_08_0784 + 20529526-20529604,20529996-20530562,20530687-20531639,
20532292-20532479,20532578-20533013
Length = 740
Score = 28.3 bits (60), Expect = 5.7
Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 1/169 (0%)
Frame = -3
Query: 624 LDTVTVL-SVYVGCFITKLFKRRSVLLATSSVAVMXXXXXXXXXXXXXXXXXLDSVYISI 448
L T+ +L S+ + + + RR +LLAT + ++ S+
Sbjct: 574 LTTLLMLPSIGIAMRLMDMSGRRFLLLATIPILIVALAILILVNILDVGTMVHASLSTVS 633
Query: 447 TLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFRYF 268
+L + GP + + E+ R + + L F + V P
Sbjct: 634 VILYFCFFVMGFGP--IPNILCAEIFPTTVRGICIAICALTFWIGDIIVTYTLPVMLNAI 691
Query: 267 GLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMNEKKRNVAEE 121
GL GVF IY +PETK L+ I + + + E+
Sbjct: 692 GLAGVFGIYAVVCILAFLFVFMKVPETKGMPLEVITEFFSVGAKQAKED 740
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/96 (21%), Positives = 39/96 (40%)
Frame = -3
Query: 450 ITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFRY 271
+ + F A S G ++ + E++ LR R+ + + + + G V
Sbjct: 375 VASVMAFVAAFSVGFGPMTATYTAEIMPLRLRAQGASLGMAVNRLTCGVVSMTFISLAGG 434
Query: 270 FGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEI 163
+ G FF+Y LPET+ RSL+++
Sbjct: 435 ITMAGCFFLYAGVAAVACVFVYVRLPETRGRSLEDM 470
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 387 ISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFR 274
I+ ELI L+F + L ++V I K +GT F +F+
Sbjct: 215 ITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQ 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,834,541
Number of Sequences: 37544
Number of extensions: 199035
Number of successful extensions: 446
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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