Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b06
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical pr...    48   8e-06
L23647-2|AAK29995.1|  773|Caenorhabditis elegans Hypothetical pr...    34   0.078
L23647-1|AAL11102.1|  624|Caenorhabditis elegans Hypothetical pr...    34   0.078
Z99270-1|CAB16470.4|  500|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    31   0.55 
Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    31   0.72 
AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical ...    29   2.2  
U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical...    29   3.9  
AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related ...    29   3.9  
U49944-4|AAA93419.1|  457|Caenorhabditis elegans Neuropeptide re...    28   6.8  
AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical ...    28   6.8  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical
           protein F48E3.2 protein.
          Length = 488

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 1/178 (0%)
 Frame = -3

Query: 636 GMLILDTVTVLSVYVGCFITKLFKRRSVLLATSSVAVMXXXXXXXXXXXXXXXXXLDSVY 457
           GML L +   LS  VG FI + + R+ +L+ T+SV +                  +    
Sbjct: 308 GMLFLSS---LSTIVGMFIVEKYSRKWLLIGTASVNIAAILVFSLSAILSHYWTWIGYGC 364

Query: 456 ISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFT- 280
           I   +L G + +++ GP  ++  I+ EL+ + FR+ S  + VL        V+ F  F  
Sbjct: 365 IICLILHGISYSVAMGP--IAWFITSELVPINFRAASQSL-VLALNHTVALVLAFLTFPL 421

Query: 279 FRYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMNEKKRNVAEETKMIT 106
           ++  G   +   +              LPETKD+ +  I + + E K    E  K+ T
Sbjct: 422 YKTIGPITLVIFFVIPGILCIIMLILYLPETKDKHINVIVEQLRETKAKRKESQKLET 479


>L23647-2|AAK29995.1|  773|Caenorhabditis elegans Hypothetical
           protein ZC262.3a protein.
          Length = 773

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -2

Query: 337 YSFNIQIVEWYSYEIFTVYVSLFWTARRVLYLRLILVNFLIFIVPISTR 191
           Y F +  ++WYSY++F    S+FW       L + L++FL+ I  I TR
Sbjct: 476 YHFRLDYLDWYSYDVFN---SVFW-GGLATSLIVCLISFLLNITWILTR 520


>L23647-1|AAL11102.1|  624|Caenorhabditis elegans Hypothetical
           protein ZC262.3b protein.
          Length = 624

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -2

Query: 337 YSFNIQIVEWYSYEIFTVYVSLFWTARRVLYLRLILVNFLIFIVPISTR 191
           Y F +  ++WYSY++F    S+FW       L + L++FL+ I  I TR
Sbjct: 476 YHFRLDYLDWYSYDVFN---SVFW-GGLATSLIVCLISFLLNITWILTR 520


>Z99270-1|CAB16470.4|  500|Caenorhabditis elegans Hypothetical
           protein Y37A1A.3 protein.
          Length = 500

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = -3

Query: 459 YISITLLTGFTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKF-SPF 283
           Y  I+ +  F    + GP  LS+ I+GEL+    RS S   T  +   +   ++ F  P 
Sbjct: 391 YFLISAICMFNFLFAMGPGPLSMFITGELVPQNCRSASSVWTNAVMAVVRFLILTFYLPV 450

Query: 282 --TFRYFGLHGVFFIYGXXXXXXXXXXXXXLPETKDRSLQEIADSMNEK 142
                 F  + +FF+               LPETK R+++EI +    K
Sbjct: 451 KNMTSEFMAYAIFFV--VPMIVAVLVIFFLLPETKGRNVEEIREEYERK 497


>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = -3

Query: 432 FTMAISSGPMILSLAISGELISLRFRSFSLCVTVLIFKSLNGTVMKFSPFTFRYFGLHGV 253
           + +  SSG   L   ++ E   +  RS  + ++       N  +        +  G +G 
Sbjct: 474 YLLTFSSGFTSLPWVLNSEFYPMWARSTCVAISTTSNWVFNLIIALTYLSLTQVIGKYGA 533

Query: 252 FFIYGXXXXXXXXXXXXXLPETKDRSLQEIAD-SMNEKKRNVAEETKMIT 106
           F++Y              +PETK  S++E+    MN+K+R  AE  +  T
Sbjct: 534 FWLYAGLTVIAFIFILFLVPETKGYSIEEVEMLFMNKKQRREAESRRRET 583


>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 52  FNF*KCPLRNYFFIIKYISNHFCLFGYISFFFIHRIGYFLQRSVLSF 192
           F+F  C +  YF+   Y++N+F  +   S  F   I YF  +  +S+
Sbjct: 104 FHFTDCEVELYFY---YLTNYFSTYSVFSLTFDRLISYFFPKCYISY 147


>AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical
           protein Y45F10B.14 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = +1

Query: 88  FIIKYISNHFC-LFGYISFFFIHRI-GYFLQRS----VLSF 192
           F I YISN FC  FGY   FF H +  +F+  S    VLSF
Sbjct: 70  FTIGYISNGFCKYFGYRVCFFSHNLMAHFIVHSNYSLVLSF 110


>U88178-4|AAC24411.1|  460|Caenorhabditis elegans Hypothetical
           protein W09C3.2 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/20 (70%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 123 LRLHFVFFHSS-NRLFLAAI 179
           + LHFV FHSS N L+LAAI
Sbjct: 1   MSLHFVLFHSSLNYLYLAAI 20


>AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical
           protein Y39B6A.48 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 269 LDCTACSLFTAHSR*LSYFYCTYIYQKLRTDRCK 168
           ++C +C +  ++     Y   TYIY K+ TDRC+
Sbjct: 46  VECYSC-MSLSYQTSWKYLQTTYIYPKVFTDRCR 78


>AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related
           protein HOT-2 protein.
          Length = 162

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 269 LDCTACSLFTAHSR*LSYFYCTYIYQKLRTDRCK 168
           ++C +C +  ++     Y   TYIY K+ TDRC+
Sbjct: 9   VECYSC-MSLSYQTSWKYLQTTYIYPKVFTDRCR 41


>U49944-4|AAA93419.1|  457|Caenorhabditis elegans Neuropeptide
           receptor family protein1 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -2

Query: 361 IS*LFTVRYSFNIQIVEWYSYEIFTVYVSLFWTARRVLYLRLILVNFLIFIVPIS 197
           +S + T+ Y+FN+Q++E+    I   + +  W + +      ++V    F+VP +
Sbjct: 151 LSFVVTLPYAFNMQMIEYTEERICGYFCTEKWESAKSRRAYTMIVMLAQFVVPFA 205


>AC024794-2|AAK68498.1|  618|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +3

Query: 129 LHFVFFHSSNRLFLAAICP*FLVDIGTIKIRKLTRMSRK*RTRR 260
           L  V+F   NRLF       FL+ IGT   +K    S K RTRR
Sbjct: 9   LDLVYFLVENRLFQPKTL--FLLKIGTAPRKKGAESSTKVRTRR 50


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 189 TKDRSLQEIADSMNEKKRNVAEETKMIT 106
           TK+  L ++ + + EKK+ +AE  +++T
Sbjct: 624 TKEDKLDKLEEELQEKKQQIAESKELVT 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,380,260
Number of Sequences: 27780
Number of extensions: 220540
Number of successful extensions: 675
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)