Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b03
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    46   7e-06
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         29   0.63 
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   1.9  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   1.9  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    27   1.9  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   3.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   5.8  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    25   7.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   7.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   7.7  

>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
 Frame = -1

Query: 677 SIXXIVLVXGQSYSHXXXXXXGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFATM 498
           S   + ++ G +YS        G  + +      +L  + + I  +A NGV E +  +  
Sbjct: 331 SYMSLFILFGSNYSDIVLLFGAGSKWASPDSS-SILSWYAMYIPFMAANGVLEAFYVSAA 389

Query: 497 TSSQLNSYNYLMVIFSVSFLVL-SYCLTYI-FGPIGFIISNCINMFARIMHSIHFIRNKY 324
            SSQL       +  +V + +   + L++   G  G I++N +N+  RI  ++ FI + Y
Sbjct: 390 NSSQLYDQGKCYLASAVFYFITGKFLLSWFNLGSHGLILANILNLSLRICFALRFILHNY 449

Query: 323 KD 318
           KD
Sbjct: 450 KD 451


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
 Frame = -1

Query: 569 RSHCLAIVL----LAINGVTECYSFATMTSSQLNSYNYLMVIFSVSFLVLS---YCLTYI 411
           + HC  +V+    L+I+   EC+ +  +  SQ +   +L  +FSV  +++S   +C+ Y 
Sbjct: 15  KEHCYTMVISFAVLSIHYACECFLYPKLFDSQRSPSPFLRWLFSVLGVLMSMDVFCILYA 74

Query: 410 F 408
           +
Sbjct: 75  Y 75


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 24/87 (27%), Positives = 40/87 (45%)
 Frame = -1

Query: 512 SFATMTSSQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIR 333
           S A    SQ + Y    V+ SV   V    +  +FGP GF+ ++C+ +    ++ +    
Sbjct: 713 SLARAIYSQADIYLLDDVLSSVDQHVSRDLIKNLFGPEGFLRTHCVVLTTNSLNVL---- 768

Query: 332 NKYKDTEYKPLNGLLVGKIFLSTLFIA 252
            K  D+ Y   NG +V K     LF++
Sbjct: 769 -KEADSIYILSNGKIVEKGNYEHLFVS 794


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 136 LFS*PQAINTHSSIIPPTNMWSNIKEGNKRISDIL 240
           LFS     +T+S++  P  +WS + E N+R+  I+
Sbjct: 91  LFSVDLNKDTYSALKAPLKIWSKLWEDNRRLKKII 125


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 184 PTNMWSNIKEGNKRISDILHTKPAMNNVDKNILPTSKPFKGLYSVS 321
           PTNMWS   +G+   S     KP   N   N+  T+    G+ S S
Sbjct: 387 PTNMWSPFHDGDDDESTSRRPKP--KNKPSNVTSTTSYTSGMTSSS 430


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -1

Query: 272 LSTLFIAGFVCKISEIRLFPSFILLHILVGGIMLLCVLIAWGYENRELVVKMHRKIMNKE 93
           + T+   G +  +  +  F SF++  ILV  I   C    WG  ++ ++    RK + + 
Sbjct: 485 VGTILSFGVMFYVDRLNAFISFLIAGILVVVIYFTCPPKNWGDVSQGIIYHQLRKYLLQT 544

Query: 92  EK 87
            K
Sbjct: 545 NK 546


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 275 FLSTLFIAGFVCKISEIRL--FPSFILLHILVGGIMLLCVLIAW 150
           FLS  F   F+  +S+I +  F SF +LH L    + +CV +++
Sbjct: 126 FLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSF 169



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 459 NFLCKFLSFVI-LFDIYFWSYRIHHFKLYKYVC 364
           +F   FL F+  +F +YF S+ I HF  + ++C
Sbjct: 130 SFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLC 162


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 631  HYCFCXEERRSLQVDC 584
            HYCFC +    + ++C
Sbjct: 1172 HYCFCRQPEAGMMIEC 1187


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = -1

Query: 401 IGFIISNCINMFARIMHSIHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGFVCKISEIR 222
           I F I++ IN    ++ S  +    YK + +   NGL+  K  ++  F      K  E  
Sbjct: 284 IDFPINHIINYEINVLGSFRYAHGCYKQSLFLVSNGLVDVKPLITHRFAFKDALKAYETV 343

Query: 221 LFPSFILLHILVGG 180
                 +L +++GG
Sbjct: 344 ASGEEGVLKVIIGG 357


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 67  NY*STDSFSSLFIIFLCILTTSSLFS*PQAINTHSSIIPPTNMWSNI-KEGNKRISDILH 243
           N+   +S+S L++     ++T+  F+   AI TH ++    ++W  + KE  K   + +H
Sbjct: 464 NHTKYESYSPLYMPMSYSMSTALNFAAVTAIFTHCALYNGKDIWQRLWKESGK--DECIH 521

Query: 244 TKPAMN 261
            K   N
Sbjct: 522 RKLMRN 527


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 157 INTHSSIIPPTNMWSNIKEGNKRISDILHTK 249
           +   S  +PPTN +S  K+G    +D L  K
Sbjct: 671 LTKESKEVPPTNSFSFAKKGKDEANDSLSAK 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,268
Number of Sequences: 5004
Number of extensions: 55335
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)