Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b03
(683 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC043595-1|AAH43595.1| 541|Homo sapiens RFT1 homolog (S. cerevi... 134 4e-31
AJ318099-1|CAC69544.1| 541|Homo sapiens putative endoplasmic re... 134 4e-31
BC006846-1|AAH06846.1| 197|Homo sapiens RFT1 protein protein. 133 6e-31
Y14436-1|CAC14588.1| 284|Homo sapiens phosphatidic acid phospha... 35 0.31
BC117133-1|AAI17134.1| 284|Homo sapiens phosphatidic acid phosp... 35 0.31
BC039847-1|AAH39847.1| 284|Homo sapiens phosphatidic acid phosp... 35 0.31
AF017116-1|AAC32041.1| 289|Homo sapiens type-2 phosphatidic aci... 35 0.31
AF014402-1|AAC16032.1| 284|Homo sapiens type-2 phosphatidic aci... 35 0.31
AB000888-1|BAA22593.1| 284|Homo sapiens phosphatidic acid phosp... 35 0.31
AF014403-1|AAC16033.1| 285|Homo sapiens type-2 phosphatidic aci... 33 0.95
>BC043595-1|AAH43595.1| 541|Homo sapiens RFT1 homolog (S.
cerevisiae) protein.
Length = 541
Score = 134 bits (323), Expect = 4e-31
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 5/169 (2%)
Frame = -1
Query: 662 VLVXGQSYSHXXXXXXGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFATMTSSQL 483
+ V G +YS GG +G PV LLRS+CL ++LLAINGVTEC++FA M+ ++
Sbjct: 343 ITVFGFAYSQLALDIYGGTMLSSGSGPV-LLRSYCLYVLLLAINGVTECFTFAAMSKEEV 401
Query: 482 NSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKP 303
+ YN++M+ S SFLVLSY LT G +GFI++NC NM RI S+ FI Y+ + ++P
Sbjct: 402 DRYNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPHRP 461
Query: 302 LNGLLVGKIFLSTLFIAGFVCKISEIRL-----FPSFILLHILVGGIML 171
L GL + + L T ++G V +SE+ L +P+ L HI VG L
Sbjct: 462 LAGLHLSPVLLGTFALSGGVTAVSEVFLCCEQGWPA-RLAHIAVGAFCL 509
>AJ318099-1|CAC69544.1| 541|Homo sapiens putative endoplasmic
reticulum multispan transmembrane protein protein.
Length = 541
Score = 134 bits (323), Expect = 4e-31
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 5/169 (2%)
Frame = -1
Query: 662 VLVXGQSYSHXXXXXXGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFATMTSSQL 483
+ V G +YS GG +G PV LLRS+CL ++LLAINGVTEC++FA M+ ++
Sbjct: 343 ITVFGFAYSQLALDIYGGTMLSSGSGPV-LLRSYCLYVLLLAINGVTECFTFAAMSKEEV 401
Query: 482 NSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKP 303
+ YN++M+ S SFLVLSY LT G +GFI++NC NM RI S+ FI Y+ + ++P
Sbjct: 402 DRYNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPHRP 461
Query: 302 LNGLLVGKIFLSTLFIAGFVCKISEIRL-----FPSFILLHILVGGIML 171
L GL + + L T ++G V +SE+ L +P+ L HI VG L
Sbjct: 462 LAGLHLSPVLLGTFALSGGVTAVSEVFLCCEQGWPA-RLAHIAVGAFCL 509
>BC006846-1|AAH06846.1| 197|Homo sapiens RFT1 protein protein.
Length = 197
Score = 133 bits (321), Expect = 6e-31
Identities = 73/167 (43%), Positives = 103/167 (61%), Gaps = 5/167 (2%)
Frame = -1
Query: 656 VXGQSYSHXXXXXXGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFATMTSSQLNS 477
V G +YS GG +G PV LLRS+CL ++LLAINGVTEC++FA M+ +++
Sbjct: 1 VFGFAYSQLALDIYGGTMLSSGSGPV-LLRSYCLYVLLLAINGVTECFTFAAMSKEEVDR 59
Query: 476 YNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKPLN 297
YN++M+ S SFLVLSY LT G +GFI++NC NM RI S+ FI Y+ + ++PL
Sbjct: 60 YNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPHRPLA 119
Query: 296 GLLVGKIFLSTLFIAGFVCKISEIRL-----FPSFILLHILVGGIML 171
GL + + L T ++G V +SE+ L +P+ L HI VG L
Sbjct: 120 GLHLSPVLLGTFALSGGVTAVSEVFLCCEQGWPA-RLAHIAVGAFCL 165
>Y14436-1|CAC14588.1| 284|Homo sapiens phosphatidic acid
phosphatase type 2 protein.
Length = 284
Score = 34.7 bits (76), Expect = 0.31
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -1
Query: 410 FGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGFVCKIS 231
F I I+ ++++ ++HS FIRN Y T YK + L G +L + K S
Sbjct: 66 FSIIVIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSL---TDIAKYS 122
Query: 230 EIRLFPSFI 204
RL P F+
Sbjct: 123 IGRLRPHFL 131
>BC117133-1|AAI17134.1| 284|Homo sapiens phosphatidic acid
phosphatase type 2A protein.
Length = 284
Score = 34.7 bits (76), Expect = 0.31
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -1
Query: 410 FGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGFVCKIS 231
F I I+ ++++ ++HS FIRN Y T YK + L G +L + K S
Sbjct: 66 FSIIVIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSL---TDIAKYS 122
Query: 230 EIRLFPSFI 204
RL P F+
Sbjct: 123 IGRLRPHFL 131
>BC039847-1|AAH39847.1| 284|Homo sapiens phosphatidic acid
phosphatase type 2A protein.
Length = 284
Score = 34.7 bits (76), Expect = 0.31
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -1
Query: 410 FGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGFVCKIS 231
F I I+ ++++ ++HS FIRN Y T YK + L G +L + K S
Sbjct: 66 FSIIVIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSL---TDIAKYS 122
Query: 230 EIRLFPSFI 204
RL P F+
Sbjct: 123 IGRLRPHFL 131
>AF017116-1|AAC32041.1| 289|Homo sapiens type-2 phosphatidic acid
phosphohydrolase protein.
Length = 289
Score = 34.7 bits (76), Expect = 0.31
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -1
Query: 410 FGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGFVCKIS 231
F I I+ ++++ ++HS FIRN Y T YK + L G +L + K S
Sbjct: 71 FSIIVIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSL---TDIAKYS 127
Query: 230 EIRLFPSFI 204
RL P F+
Sbjct: 128 IGRLRPHFL 136
>AF014402-1|AAC16032.1| 284|Homo sapiens type-2 phosphatidic acid
phosphatase alpha-1 protein.
Length = 284
Score = 34.7 bits (76), Expect = 0.31
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -1
Query: 410 FGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGFVCKIS 231
F I I+ ++++ ++HS FIRN Y T YK + L G +L + K S
Sbjct: 66 FSIIVIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSL---TDIAKYS 122
Query: 230 EIRLFPSFI 204
RL P F+
Sbjct: 123 IGRLRPHFL 131
>AB000888-1|BAA22593.1| 284|Homo sapiens phosphatidic acid
phosphatase 2a protein.
Length = 284
Score = 34.7 bits (76), Expect = 0.31
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -1
Query: 410 FGPIGFIISNCINMFARIMHSIHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGFVCKIS 231
F I I+ ++++ ++HS FIRN Y T YK + L G +L + K S
Sbjct: 66 FSIIVIILGETLSVYCNLLHSNSFIRNNYIATIYKAIGTFLFGAAASQSL---TDIAKYS 122
Query: 230 EIRLFPSFI 204
RL P F+
Sbjct: 123 IGRLRPHFL 131
>AF014403-1|AAC16033.1| 285|Homo sapiens type-2 phosphatidic acid
phosphatase alpha-2 protein.
Length = 285
Score = 33.1 bits (72), Expect = 0.95
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Frame = -1
Query: 557 LAIVLLAINGVTECYSFATMTSSQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFII-SN 381
LA + +A+ + + Y F + NS NY + + VL L + P+ II
Sbjct: 19 LASMPMAVLKLGQIYPFQRGFFCKDNSINYPYHDSTAASTVL--ILVGVGLPVSSIILGE 76
Query: 380 CINMFARIMHSIHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGFVCKISEIRLFPSFI 204
++++ ++HS FI N Y T YK + L G +L + K S RL P F+
Sbjct: 77 TLSVYCNLLHSNSFISNNYIATIYKAIGTFLFGAAASQSL---TDIAKYSIGRLRPHFL 132
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,282,882
Number of Sequences: 237096
Number of extensions: 1765305
Number of successful extensions: 2871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2871
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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