Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b03
         (683 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145649-1|AAD38624.1|  556|Drosophila melanogaster BcDNA.GH0838...   192   5e-49
AE014298-777|AAF46064.1|  556|Drosophila melanogaster CG3149-PA ...   192   5e-49

>AF145649-1|AAD38624.1|  556|Drosophila melanogaster BcDNA.GH08388
           protein.
          Length = 556

 Score =  192 bits (467), Expect = 5e-49
 Identities = 98/186 (52%), Positives = 125/186 (67%)
 Frame = -1

Query: 683 VSSIXXIVLVXGQSYSHXXXXXXGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFA 504
           VSSI  I    GQSYS+      GG  FVAGGLP  LL+ HCLAI LLA+NG++E Y FA
Sbjct: 362 VSSIGLIAFTFGQSYSYPVLLLYGGPDFVAGGLPQSLLQWHCLAIYLLAVNGISEGYMFA 421

Query: 503 TMTSSQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIRNKY 324
           T TS  ++ YNYLM IFSVSFLVLSY LT IFGP+GFI +NCINM +RI++S ++IR++Y
Sbjct: 422 TNTSRDIDKYNYLMAIFSVSFLVLSYILTGIFGPVGFIFANCINMLSRILYSTYYIRHQY 481

Query: 323 KDTEYKPLNGLLVGKIFLSTLFIAGFVCKISEIRLFPSFILLHILVGGIMLLCVLIAWGY 144
           +     PL GL  GK+F  TLF+AG VC   +     S +  H+ VG +  L  L++W  
Sbjct: 482 RPLSLDPLLGLWPGKLFGCTLFLAGIVCYWYQ----SSDLATHLGVGVLAGLACLLSWAL 537

Query: 143 ENRELV 126
            +R+LV
Sbjct: 538 AHRDLV 543


>AE014298-777|AAF46064.1|  556|Drosophila melanogaster CG3149-PA
           protein.
          Length = 556

 Score =  192 bits (467), Expect = 5e-49
 Identities = 98/186 (52%), Positives = 125/186 (67%)
 Frame = -1

Query: 683 VSSIXXIVLVXGQSYSHXXXXXXGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFA 504
           VSSI  I    GQSYS+      GG  FVAGGLP  LL+ HCLAI LLA+NG++E Y FA
Sbjct: 362 VSSIGLIAFTFGQSYSYPVLLLYGGPDFVAGGLPQSLLQWHCLAIYLLAVNGISEGYMFA 421

Query: 503 TMTSSQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIRNKY 324
           T TS  ++ YNYLM IFSVSFLVLSY LT IFGP+GFI +NCINM +RI++S ++IR++Y
Sbjct: 422 TNTSRDIDKYNYLMAIFSVSFLVLSYILTGIFGPVGFIFANCINMLSRILYSTYYIRHQY 481

Query: 323 KDTEYKPLNGLLVGKIFLSTLFIAGFVCKISEIRLFPSFILLHILVGGIMLLCVLIAWGY 144
           +     PL GL  GK+F  TLF+AG VC   +     S +  H+ VG +  L  L++W  
Sbjct: 482 RPLSLDPLLGLWPGKLFGCTLFLAGIVCYWYQ----SSDLATHLGVGVLAGLACLLSWAL 537

Query: 143 ENRELV 126
            +R+LV
Sbjct: 538 AHRDLV 543


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,708,546
Number of Sequences: 53049
Number of extensions: 528174
Number of successful extensions: 1107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)