Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b03
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical pr...    66   3e-11
U58748-5|AAP31419.1|  285|Caenorhabditis elegans Hypothetical pr...    58   6e-09
AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical ...    33   0.14 
AF125958-1|AAD14729.1|  342|Caenorhabditis elegans Serpentine re...    31   0.77 
Z81557-2|CAB04536.1|  354|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL032647-4|CAA21692.1|  360|Caenorhabditis elegans Hypothetical ...    28   5.4  
U20861-4|AAA62296.3|  297|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    27   9.4  
AC024805-9|AAK39341.2|  237|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK180.3a protein.
          Length = 522

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 3/175 (1%)
 Frame = -1

Query: 683 VSSIXXIVLVXGQSYSHXXXXXXGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFA 504
           V  I  +    G  YS       GG+     G  + LL  +   I++ AING+TE ++ A
Sbjct: 323 VGVIGFVACTFGIPYSPVVISLYGGKLLSENGGAL-LLSLYSGYILVTAINGITEGFAMA 381

Query: 503 TMTSSQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHFIRNKY 324
           +M + Q+ ++   + + S+  L+++Y L       GFI++N INM  RI+++   IR   
Sbjct: 382 SMDNRQIFTHGKFLFVTSIIHLIINYVLCVYMNSAGFIVANIINMSVRIIYNWRTIREYL 441

Query: 323 KDTEYKPLNGLLVGK--IFLS-TLFIAGFVCKISEIRLFPSFILLHILVGGIMLL 168
            D        L  G+  IFL  +L    F   +       S+ L HI +G + L+
Sbjct: 442 GDKCPSFTEVLPTGQTSIFLGVSLLATSFTYLLFATTPGLSYTLAHIAIGAVCLI 496


>U58748-5|AAP31419.1|  285|Caenorhabditis elegans Hypothetical
           protein ZK180.3b protein.
          Length = 285

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 33/111 (29%), Positives = 57/111 (51%)
 Frame = -1

Query: 683 VSSIXXIVLVXGQSYSHXXXXXXGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFA 504
           V  I  +    G  YS       GG+     G  + LL  +   I++ AING+TE ++ A
Sbjct: 175 VGVIGFVACTFGIPYSPVVISLYGGKLLSENGGAL-LLSLYSGYILVTAINGITEGFAMA 233

Query: 503 TMTSSQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMH 351
           +M + Q+ ++   + + S+  L+++Y L       GFI++N INM  RI++
Sbjct: 234 SMDNRQIFTHGKFLFVTSIIHLIINYVLCVYMNSAGFIVANIINMSVRIIY 284


>AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical
           protein VF36H2L.1 protein.
          Length = 308

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -1

Query: 491 SQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIGFIISNCIN 372
           S LNS  + +++F+V FL+L  C+ Y    +G  IS+ +N
Sbjct: 221 SSLNSRGFHVLVFAVQFLILLICIAYCNVIMGGTISSFVN 260


>AF125958-1|AAD14729.1|  342|Caenorhabditis elegans Serpentine
           receptor, class j protein9 protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 515 YSFATMTSSQLNSYNYLMVIFSVSFLVLSYCLTYIFGPIG 396
           Y   T + SQ+  Y YL++IF++ F +L Y ++ I  PIG
Sbjct: 28  YLAMTKSRSQMGKYKYLLIIFAI-FDIL-YSISEILTPIG 65


>Z81557-2|CAB04536.1|  354|Caenorhabditis elegans Hypothetical
           protein F59A1.4 protein.
          Length = 354

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -1

Query: 560 CLAIVLLAINGVTECYSFATMTSSQLNSYNYLMVIFSVSFLVLS 429
           CL+I+   IN +   Y     T+ QL SY YLM+ FS+  LV S
Sbjct: 15  CLSIL---INSIL-MYMIRKKTTKQLGSYVYLMLSFSIFELVFS 54


>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = -1

Query: 506 ATMTSSQLNSYNYLMV----IFSVSFLVLSYCLTYIFGPIGFIISNCINMFARIMHSIHF 339
           AT T  +L SY+Y +V    I  VSF  L YC T+ F      +   I MF+ ++  I  
Sbjct: 171 ATETKIRLYSYHYQVVISIFIIIVSFFHLRYCCTFFF----LYLPLAIGMFS-LLQGIVS 225

Query: 338 IRNKYKDTEYKPLNGLLVGKIF 273
            R K   +  + LN  ++G  F
Sbjct: 226 WRTKCHGSTTRALN--IIGAAF 245


>Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical
           protein C12D8.12 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 560 CLAIVLLAINGVTECYSFATMTSSQLNSYNYLMVIFSVSFLVLS 429
           C A+++         Y   T ++S++ SY Y+M+  S+S L  S
Sbjct: 11  CFALLISIFLNTILTYLILTKSNSKMGSYKYIMMYLSLSALCYS 54


>AL032647-4|CAA21692.1|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.5 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = -1

Query: 293 LLVGKIFLS------TLFIAGFVCKISE--IRLFPSFILLHILVGGIMLLCVLIAWGYE 141
           +LVG + +S      T  + GF  ++    + +  + ILL  LV  + LLC  +AW +E
Sbjct: 259 VLVGSVHISLTLLVFTCLMLGFFERLQVFFVHILENLILLPALVMAVALLCCSVAWRHE 317


>U20861-4|AAA62296.3|  297|Caenorhabditis elegans Hypothetical
           protein C28H8.8 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 456 FLCKFLSFVILFDIYFWSYRIHHFKLY 376
           F+  FL F +LF +++  Y++H    Y
Sbjct: 2   FIILFLCFTVLFMLFYPDYKVHQLSSY 28


>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -3

Query: 471 LFNGNFLCKFLSFV---ILFDIYFWSYRIHHFKLYKYVC*D 358
           +FNG F   +L +V   I FD  F    +HH      +C D
Sbjct: 48  IFNGVFSVVYLVYVVPMIFFDSSFMKLNVHHVAFILLICYD 88


>AC024805-9|AAK39341.2|  237|Caenorhabditis elegans Hypothetical
           protein Y51H7C.10 protein.
          Length = 237

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -1

Query: 392 IISNCINMFARIMHS-IHFIRNKYKDTEYKPLNGLLVGKIFLSTLFIAGF-VCKISEI 225
           +I+ CI  F  ++ + I+F+ N++K+T  K   G   G+I L  L + G   C ++ +
Sbjct: 157 VIAACILTFVLLVGTVIYFLTNRWKETRMKMDLGAPPGRI-LDPLSVQGLATCHVNNV 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,370,866
Number of Sequences: 27780
Number of extensions: 299699
Number of successful extensions: 808
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)