Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10b02
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    31   0.12 
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   2.7  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   3.5  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    25   6.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   6.2  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   6.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   8.2  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 221 WQIVFLITVSFQFITNAVFVIFVKGSVQPWNF-HDEERIGTGVEELKSLNDHKNSIKEKE 45
           WQ +FLI     F+   V  + +  SV+  NF  DEE+    + +++  ND  ++I EK 
Sbjct: 219 WQYLFLIEGGVTFLCAIVIFLVLPVSVETANFLTDEEKT---LAKMRIENDSSSAISEKL 275

Query: 44  KLGNS*RVF 18
               S  VF
Sbjct: 276 SFKQSLTVF 284


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 212 VFLITVSFQFITNAVFVIFVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEK 48
           VFL   +  F+  A  +   K SV+      +E      +E KS ++HK   K+K
Sbjct: 32  VFLHIFTLTFLFKAFLLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKHKKDK 86


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 275 VPVIVSNIVKDDLKNPSRWQIVFLITVSFQF 183
           +P+++  ++   L+ P+ W+IV  +   FQF
Sbjct: 181 IPLLIFLLISPVLQTPALWEIVETMITLFQF 211


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -1

Query: 281 LLVPVIVSNIVKDDLKNPSRWQIVFLITVSFQFITNAVFVIFVKGSVQPWNFHDEERIGT 102
           L VP +  N +   +K      IVFLIT+   F+   ++++       P  F ++     
Sbjct: 345 LTVPDVAKNYLLVPMKLLFTEPIVFLITLYSSFVYAILYLLL---EAYPIIFSEKRHFSM 401

Query: 101 GVEEL 87
           GV EL
Sbjct: 402 GVAEL 406


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 239 LKNPSRWQIVFLITVSFQFITNAVFVIFVKGSVQPWNFHDEERIGT 102
           LK+PS W ++    +S  F  N    I ++ S+Q  NF ++ R  T
Sbjct: 855 LKHPSEWGVLQHTFISSNFFENVPCYISLEQSLQ--NFQNDIRPDT 898


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 269 VIVSNIVKDDLKNPSRWQIVFLITVSFQ--FITNAVFV 162
           +IV+   +DD +NP  W +   + V+F   F+T AV++
Sbjct: 61  IIVTWDGEDDPENPKNWPLWAKLVVTFDVCFLTFAVYM 98


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 458 FLIGFCYVDKAWL 420
           F IG C++D AWL
Sbjct: 284 FAIGHCHIDTAWL 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,044
Number of Sequences: 5004
Number of extensions: 49399
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)