Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10b02
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 65 5e-11
11_01_0557 + 4394754-4396040 63 2e-10
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 43 2e-04
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 31 0.52
08_01_0465 + 4099721-4100556,4101505-4103614 29 2.1
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 29 2.7
01_05_0380 - 21633505-21634563,21634626-21634677,21636263-216363... 28 4.8
01_01_0540 + 3957622-3960903 28 4.8
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 28 6.3
04_01_0067 - 673381-673387,675388-678131 28 6.3
02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394 28 6.3
11_01_0143 + 1177220-1177462,1177727-1177855,1178114-1178170,117... 27 8.4
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349... 27 8.4
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 64.9 bits (151), Expect = 5e-11
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Frame = -1
Query: 530 TKKIMTVANIRRTANTIGMVLSGFFLIGFCYVDKAWLAVLLLMISFGMHSAVHTGFHINQ 351
T++I+++ R+ NTIG V+S L+ VL IS G + GF +N
Sbjct: 289 TRRILSITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNH 348
Query: 350 IDLSPNFAGPIMSLGNMVANLTSLLVPVIVSNIVKD------DLKNPSRWQIVFLITVSF 189
+D++P FAG +M + N L ++ + +I++ DL N W+ VF +
Sbjct: 349 MDVAPKFAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYL 408
Query: 188 QFITNAVFVIFVKG 147
++ +F+IF G
Sbjct: 409 CIFSSIIFLIFSTG 422
>11_01_0557 + 4394754-4396040
Length = 428
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Frame = -1
Query: 530 TKKIMTVANIRRTANTIGMVLSGFFLIGFCYVDKAWLAVLLLMISFGMHSAVHTGFHINQ 351
T+KI++V R+ NT+G V+S L+ A+ +S G + GF +N
Sbjct: 290 TRKILSVTKTRKLLNTVGFVVSAIALMALPLFRTPSGAIFCSSVSLGFLALGRAGFAVNH 349
Query: 350 IDLSPNFAGPIMSLGNMVANLTSLLVPVIVSNIVKD------DLKNPSRWQIVFLITVSF 189
+D++P FAG +M + N L ++ + I++ DL + W+ VF +
Sbjct: 350 MDVAPKFAGIVMGISNTAGTLAGIVGVGLTGRILEAAKASNMDLTSSESWRTVFFVPGYL 409
Query: 188 QFITNAVFVIFVKG 147
++ +F+IF G
Sbjct: 410 CIFSSFIFLIFSTG 423
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = -1
Query: 500 RRTANTIGMVLSGFFLIGFCYVDKAWLAVLLLMISFGMHSAVHTGFHINQIDLSPNFAGP 321
R+ TIG V G L+G +A L I+ G+ S H+GF +N +++P +AG
Sbjct: 372 RKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAGV 431
Query: 320 IMSLGNMVANLTSLL 276
+ + N ++L
Sbjct: 432 LHGMSNTAGTFAAIL 446
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -1
Query: 518 MTVANIRRTANTIGMVLSGFFLIGFCYVDKAWLAVLLLMISFGMHSAVHTGFHINQIDLS 339
+++ N+R+ +IG + FL V +AVL + S G + +G + N D+
Sbjct: 398 VSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIG 457
Query: 338 PNFAG 324
P G
Sbjct: 458 PRVFG 462
>08_01_0465 + 4099721-4100556,4101505-4103614
Length = 981
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 356 LYGIQCEQQNACQMISLAAIQ 418
L+G+ EQQN CQM ++AA Q
Sbjct: 551 LHGMSIEQQNRCQMANMAAEQ 571
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 518 MTVANIRRTANTIGMVLSGFFLIGFCYVDKAWLAVLLLMISFGM 387
++V +R+ +IG + FFL ++D +AVL + S G+
Sbjct: 406 LSVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGV 449
>01_05_0380 -
21633505-21634563,21634626-21634677,21636263-21636310,
21636349-21637289,21638737-21638982
Length = 781
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 326 QQSSATSLFDLYGIQCEQQNACQMISLAAIQPTRPYPRSRIQSRKTQIV 472
Q SSA+S FD +QC A+ Q T+P P S + +T ++
Sbjct: 704 QASSASSPFDR--LQCGGSGPVSAFPTASAQNTQPQPSSGSRDNQTNVI 750
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 130 FHGCTDPFTNITKTALVMNWKDTVMRNTICHLLGFFKS 243
F G D FT+ A+V NW+ + +C LG F++
Sbjct: 322 FCGILDRFTSEDVLAVVPNWRCNTTDDALCRRLGPFET 359
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -1
Query: 266 IVSNIVKDDLKNPSRWQIVFLITVSFQFITNAVFVIF--VKGSVQPWNFHDEERIG-TGV 96
I + K ++ P W++ +ITV+ + VFV+ VK + G T +
Sbjct: 430 IYQRLAKSEIGRPPHWKLPVVITVAVVLVIIVVFVLVWAVKRKPREGGIRRSVSPGITSI 489
Query: 95 EELKSLNDHKNSIKEK 48
+ + N +N KEK
Sbjct: 490 DRVTLQNATENFAKEK 505
>04_01_0067 - 673381-673387,675388-678131
Length = 916
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 164 VIFVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEK 48
++ ++GSV+ FH ++ +G +EELK L D + +K K
Sbjct: 679 LVNLQGSVE---FHVKKGVGCTLEELKGLKDLRGKLKIK 714
>02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394
Length = 359
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 143 VQPWNFHDEERIGTGVEELKSLNDHKN 63
++PW+ D RIGTG +E HK+
Sbjct: 50 LEPWDLKDRCRIGTGAQEEWYFFSHKD 76
>11_01_0143 +
1177220-1177462,1177727-1177855,1178114-1178170,
1178369-1178601,1178880-1178971,1179116-1179330,
1180153-1180161
Length = 325
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 576 FTMAIFFGYISDYLLNKKDYDSSQHQKNSEYHR 478
F+ + G+ +Y N K YD++ + ++YH+
Sbjct: 242 FSNCMLRGFSGNYTYNDKQYDATTAPQGADYHK 274
>10_08_0340 -
16934317-16934478,16934569-16934745,16934842-16934940,
16935025-16935225,16935389-16935409,16935554-16935661,
16935749-16936130,16936693-16936912,16938673-16938827,
16938960-16939183,16939648-16939707
Length = 602
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 434 DKAWLAVLLLMISFGMHSAVHTGFHINQIDLSPNFAGPIMSLGNMVANLTSLLVP 270
++AW+ + L + G V G +Q+D N+ I+ L ++ L +L VP
Sbjct: 61 NQAWITISRLQNARGRRQIVRRGIEFDQVDRERNWDDQII-LSGILLYLGALYVP 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,324,793
Number of Sequences: 37544
Number of extensions: 314665
Number of successful extensions: 869
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -