Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a21
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.5  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    26   5.5  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   7.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   7.3  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 61  NNSRKITNYYRNRPELNKIIYIFNNKIPTSQ 153
           N S KI   Y    ELN  I+I   ++PT Q
Sbjct: 709 NESNKINEEYYLMNELNTEIFIQAQRVPTPQ 739


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 308 NIVLIKRHIQYHGYVIVNFFLL 243
           +++ IK H+ +H    +NFFLL
Sbjct: 139 SLLSIKSHVHFHLIPFINFFLL 160


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 58  CNNSRKITNYYRNRPELNKIIYIFNNK 138
           C  S + TN+ ++RPEL     I N K
Sbjct: 15  CKFSMRFTNFLKSRPELKTKPAILNGK 41


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 67  SRKITNYYRNRPELNKIIYI--FNNKIP 144
           SRKI+   +N+PEL++I +   FN + P
Sbjct: 670 SRKISPLIQNKPELSRISFYEQFNTEAP 697


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 464 KFTVCMCVSKSRGV*LYLQFHDHHSDEHK 550
           K TVC   S S+    Y+Q ++H  D H+
Sbjct: 520 KCTVCTPASLSKNKKPYMQENEHQKDSHE 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,570
Number of Sequences: 5004
Number of extensions: 46852
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)