Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a21
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598...    29   4.3  

>10_08_0972 +
           21958658-21958825,21959006-21959197,21959645-21959845,
           21959920-21960009,21960424-21960591,21961100-21961354,
           21961506-21961789,21961878-21962040,21962156-21962502,
           21962726-21962759
          Length = 633

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 359 FNLQLNHIKLYKATEICRLFFLNCSSKRYLLLNCYKFTVCMCVSKSR 499
           F L+++ +      ++ R+FF     KRY  L  Y   +  C+S++R
Sbjct: 267 FKLKISQLSSKCDNKLFRIFFSTLGMKRYTFLEAYSKPI-RCISRNR 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,416
Number of Sequences: 37544
Number of extensions: 225841
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)