Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a20
         (673 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U86759-1|AAC51247.1|  580|Homo sapiens netrin-2 like protein pro...    31   5.0  
U86758-1|AAC51246.1|  580|Homo sapiens netrin-2 like protein pro...    31   5.0  
AK131301-1|BAD18469.1|  544|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AB033066-1|BAA86554.1|  733|Homo sapiens KIAA1240 protein protein.     31   5.0  

>U86759-1|AAC51247.1|  580|Homo sapiens netrin-2 like protein
           protein.
          Length = 580

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 55  CRPSXGAYEALFRTNCRKNISSSTEIGSRGSA 150
           C+P+ G+Y    +  C+K+ +    +G+RG A
Sbjct: 445 CKPARGSYRISLKKFCKKDYAVQVAVGARGEA 476


>U86758-1|AAC51246.1|  580|Homo sapiens netrin-2 like protein
           protein.
          Length = 580

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 55  CRPSXGAYEALFRTNCRKNISSSTEIGSRGSA 150
           C+P+ G+Y    +  C+K+ +    +G+RG A
Sbjct: 445 CKPARGSYRISLKKFCKKDYAVQVAVGARGEA 476


>AK131301-1|BAD18469.1|  544|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16266 fis, clone IMR322013731, weakly  similar
           to TAT-BINDING HOMOLOG 7. ).
          Length = 544

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 134 PISVELEMFFRQLVLNKASYAPXEGLHA 51
           PI  +   FF++L+LN+AS AP    HA
Sbjct: 366 PIEEDRRKFFQELILNQASMAPPRRKHA 393


>AB033066-1|BAA86554.1|  733|Homo sapiens KIAA1240 protein protein.
          Length = 733

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 134 PISVELEMFFRQLVLNKASYAPXEGLHA 51
           PI  +   FF++L+LN+AS AP    HA
Sbjct: 178 PIEEDRRKFFQELILNQASMAPPRRKHA 205


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,947,986
Number of Sequences: 237096
Number of extensions: 2122874
Number of successful extensions: 3962
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3962
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)