Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a20
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.6  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   6.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 582  RRVLFIGVRNFCLKTLSRF 638
            RRVL +  RNF L   SRF
Sbjct: 1125 RRVLIVLTRNFLLTEWSRF 1143


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 548 VNNSIDTLAFVVTKRSVRFPTAGWTDQRTIRRLAL 444
           + N +DTL + + +R +     GW       RL L
Sbjct: 550 LRNRLDTLIYPIIRRKLGSALGGWHPSDRSARLML 584


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 153 QRRPPRPYLRRAGDVLSAVG 94
           Q RPP P LRR  ++ +  G
Sbjct: 79  QPRPPHPRLRREAELEAEPG 98



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 153 QRRPPRPYLRRAGDVLSAVG 94
           Q RPP P LRR  ++ +  G
Sbjct: 135 QPRPPHPRLRREAELEAEPG 154


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 510 CHDESECVNRIVDR 551
           C+ + +C+NR+V R
Sbjct: 478 CNCDIDCINRVVQR 491


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 532 SIELLTDFFGGCGRTAFAACCSLEF 606
           SI  +  FFG CG    + C ++ F
Sbjct: 60  SIIFVISFFGCCGAIRESHCMTITF 84


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +1

Query: 238 NVWYKHHTVCKMGFKTFSKPVCGDSVTKEIMR*YGVTTKCSKNEASNNNT 387
           N W    T C   F T   P+  + ++ +    +  T +CS +  S   T
Sbjct: 294 NQWVYPLTGCLYYFSTTINPILYNVMSAKYRNAFKETCRCSPSNPSITRT 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,397
Number of Sequences: 438
Number of extensions: 4357
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)