Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a19
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0306 + 17307166-17309091                                         33   0.15 
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767...    33   0.20 
05_01_0141 - 937428-937717,938483-938705                               32   0.47 
07_01_0311 - 2211824-2212410,2213275-2213290                           28   5.8  
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    28   7.6  

>12_02_0306 + 17307166-17309091
          Length = 641

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +3

Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 557
           G+G T+ G     GA +G S T  G GT+  G A   G   G   TF   G+    GV
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDAR-GGARDGVGETFIGVGAGAGAGV 529



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +3

Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 557
           G+G T+ G     GA +G S T  G GT+  G A   G   G   T    G+    GV
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTVVGAGAGAGV 262



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +3

Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGV 557
           G+G T+ G     GA +G S T  G GT+  G A   G   G   T    G+    GV
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGAR-GGARDGVGVTVTGVGAGAGAGV 413



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 485
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 95  GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 128



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 384 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 485
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430


>01_01_0972 +
           7672048-7672390,7672546-7672709,7672864-7672961,
           7673040-7673361,7674021-7675220
          Length = 708

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = +3

Query: 459 LGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTWT 638
           LGT+ +  AM TG TAGF  +F+ S S L        S  +I+ WTR ++  G     +T
Sbjct: 43  LGTLFSFMAMRTGLTAGFVPSFNMSASLL--------SFFIIKSWTRLMARCGVASQPFT 94


>05_01_0141 - 937428-937717,938483-938705
          Length = 170

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 332 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSRL 511
           ++SH HG H G+        GH+GG+   H G+   L   +   +  G     HG +  L
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGL 153

Query: 512 F 514
           F
Sbjct: 154 F 154



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 320 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 430
           GH+G +   H GH G +   H    H GG+   H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 320 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 430
           GH+G      GGH GH     +    GH+GG+   H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160


>07_01_0311 - 2211824-2212410,2213275-2213290
          Length = 200

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 393 ATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSST-FDCSGSTLSTGVA 560
           A + GSAT   A +G +A    +GT   G ++  G TAG +    + +  T+ TG A
Sbjct: 100 AGIGGSATFGTAGMGGNAVFGTIGTAGIGGSVAAG-TAGMAGIGGNVTAGTVGTGTA 155


>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 317 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 418
           R H+ R SH H  H+ H T +   R H+    HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,785,222
Number of Sequences: 37544
Number of extensions: 206110
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)