Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a15
(162 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ435331-1|ABD92646.1| 135|Apis mellifera OBP14 protein. 20 2.4
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 20 3.2
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 19 4.2
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 19 5.6
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 19 7.4
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 18 9.8
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 18 9.8
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 18 9.8
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 18 9.8
AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding prote... 18 9.8
AF339140-1|AAK01304.1| 120|Apis mellifera odorant binding prote... 18 9.8
>DQ435331-1|ABD92646.1| 135|Apis mellifera OBP14 protein.
Length = 135
Score = 20.2 bits (40), Expect = 2.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 90 ELLAIEDQHKSLIKICSVVFE 152
ELL E+ K L+ CS + E
Sbjct: 89 ELLIDENSVKQLVSDCSTISE 109
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 139 EQILIRLLCWSSMASNSLL 83
E +L+RL C +NS++
Sbjct: 277 EVLLVRLACMFDAQTNSMI 295
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 19.4 bits (38), Expect = 4.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +3
Query: 111 QHKSLIKICSV 143
+H + IK+CSV
Sbjct: 127 KHHNFIKVCSV 137
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 19.0 bits (37), Expect = 5.6
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Frame = -1
Query: 114 AGL-LWLATHYYFDSVFH 64
AG+ +WL+ +F FH
Sbjct: 411 AGMWMWLSCSSFFQQFFH 428
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 18.6 bits (36), Expect = 7.4
Identities = 5/13 (38%), Positives = 9/13 (69%)
Frame = +1
Query: 13 TLIFIPFHIYKPI 51
T++ +PF Y P+
Sbjct: 146 TILCVPFTTYTPV 158
Score = 18.2 bits (35), Expect = 9.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 16 LIFIPFHIYKPIFS 57
+IFIP +IY+ S
Sbjct: 414 IIFIPRNIYENFIS 427
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 18.2 bits (35), Expect = 9.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 6 LHNINIYSFSYI*AHI*HICGKQNQNNN 89
+HN N Y ++Y + + C K N N
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCKKLYYNIN 117
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 18.2 bits (35), Expect = 9.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 6 LHNINIYSFSYI*AHI*HICGKQNQNNN 89
+HN N Y ++Y + + C K N N
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCKKLYYNIN 117
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 18.2 bits (35), Expect = 9.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 6 LHNINIYSFSYI*AHI*HICGKQNQNNN 89
+HN N Y ++Y + + C K N N
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCKKLYYNIN 117
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 18.2 bits (35), Expect = 9.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 6 LHNINIYSFSYI*AHI*HICGKQNQNNN 89
+HN N Y ++Y + + C K N N
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCKKLYYNIN 117
>AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding
protein ASP6 protein.
Length = 146
Score = 18.2 bits (35), Expect = 9.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +3
Query: 60 ICGKQNQNNNELL 98
+C K+N ELL
Sbjct: 42 VCSKKNDTPKELL 54
>AF339140-1|AAK01304.1| 120|Apis mellifera odorant binding
protein protein.
Length = 120
Score = 18.2 bits (35), Expect = 9.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +3
Query: 60 ICGKQNQNNNELL 98
+C K+N ELL
Sbjct: 16 VCSKKNDTPKELL 28
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,824
Number of Sequences: 438
Number of extensions: 645
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used: 2637780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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