Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a14
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 183 2e-47
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 153 2e-38
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 151 1e-37
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 136 3e-33
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 120 1e-28
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 107 1e-24
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 92 5e-20
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 65 7e-12
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 2.3
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.0
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 3.0
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 27 3.0
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 4.0
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 5.3
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 5.3
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 7.0
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 9.2
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 183 bits (445), Expect = 2e-47
Identities = 83/112 (74%), Positives = 91/112 (81%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHRVIP FMLQGGDFT NGTGGKSIYG KF DENF LKH PG+LSMANAG +TNGSQF
Sbjct: 51 FHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQF 110
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 303
FITTV T WLDG+HVVFG V EGM+VVK++E+ GS SG T RIVI CG +
Sbjct: 111 FITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCGTV 162
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 153 bits (372), Expect = 2e-38
Identities = 71/110 (64%), Positives = 84/110 (76%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHRVI NFMLQGGDFT NGTGG+SIYG KFEDENF LKH P +LSMANAG +TNGSQF
Sbjct: 56 FHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQF 115
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 309
FITTV T LDG+HVVFG V++G V+ IE +++ +VI++CG
Sbjct: 116 FITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 151 bits (365), Expect = 1e-37
Identities = 66/90 (73%), Positives = 76/90 (84%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHRVIPNFM+QGGD T +GTGGKSIYG++F DENF L H PG+LSMANAG D+NGSQF
Sbjct: 76 FHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQF 135
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQI 369
FITTVKT WLDG HVVFG V+ G ++VK+I
Sbjct: 136 FITTVKTPWLDGHHVVFGEVLSGYDIVKKI 165
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 136 bits (329), Expect = 3e-33
Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 2/114 (1%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQ 462
FHR+I FM+QGGDF + +GTG +I+ ++ F DENFTLKH PG+LSMANAG D+NG Q
Sbjct: 60 FHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQ 119
Query: 461 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 303
FFITTV +LDG+HVVFG V+EG ++VK+IE T + + + I +CG++
Sbjct: 120 FFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGEM 173
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 120 bits (290), Expect = 1e-28
Identities = 56/91 (61%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQ 462
FHRVIP+F++QGGD T G GG SIYG+KF+DE + L HTG G+LSMANAG +TN SQ
Sbjct: 43 FHRVIPDFVIQGGDPTG-TGRGGTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQ 101
Query: 461 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 369
FFIT T WLDG+H +FG VV G+ V K++
Sbjct: 102 FFITLAPTPWLDGKHTIFGRVVSGLSVCKRM 132
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 107 bits (258), Expect = 1e-24
Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQ 462
FHR+I NFM+QGGD +GTGG+SI+ FEDE + LKH P +SMAN+G +TNGSQ
Sbjct: 496 FHRIIKNFMIQGGDPLG-DGTGGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQ 554
Query: 461 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 366
FFITT T WLDG+H +F G++VV +IE
Sbjct: 555 FFITTDLTPWLDGKHTIFARAYAGLDVVHRIE 586
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 92.3 bits (219), Expect = 5e-20
Identities = 48/103 (46%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQ 462
FHR I FM+QGGD + G GG+SI+G F+DE LKH G++SMAN G +TNGSQ
Sbjct: 317 FHRNIARFMIQGGD-PSGTGRGGQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQ 375
Query: 461 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSK 333
FFI LD +H +FG VV G+ V+ +E + S K
Sbjct: 376 FFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPK 418
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 65.3 bits (152), Expect = 7e-12
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = -1
Query: 635 HRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQF 459
HRV+P F++QGGD T G GG+SIYG F E L+ G++ MA + N SQF
Sbjct: 55 HRVVPEFLIQGGDPTG-TGMGGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQF 113
Query: 458 FITTVKTSWLDGRHVVFGNVV 396
FIT T +G+ +FG VV
Sbjct: 114 FITLGPTPEWNGKQTLFGRVV 134
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 343 FPDWLPKVSICLTTSMPSTTFPKTTCLPS 429
FP WL K S CL +P T+ P T + S
Sbjct: 302 FP-WLKKNSFCLYLPIPLTSIPSTPSIRS 329
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 607 KEGTSPTITALGESPSTAISLKTRISPLSTLDLASS 500
KE +P+ITA SP +A S + ISP + + +S
Sbjct: 334 KEKNTPSITAKAGSPQSAPSKASYISPYARPGITTS 369
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 3.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 471 WFPVLHHHC 445
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +3
Query: 309 TTVFDNDSLRGLPRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELG 467
T VFD + +L+ ++++DN +IPK+ A S + +G
Sbjct: 525 TVVFDKTGTLTVGKLSVTDISIVDNLEELLDIPKNIFWAFVKASESSSEHPIG 577
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 376 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 525
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 599 DFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFI 453
D + T KS+YG +D+N F + T V+ ADT Q F+
Sbjct: 11 DLEKYPSTATKSVYGQSKDDKNVFDIHPTESEVIPGEVEYADTPSHQNFL 60
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 358 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 537
P S + +S +++ T+ P+S EV T P+ S+ A + E + G V
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221
Query: 538 SSSNL 552
SSS++
Sbjct: 222 SSSSI 226
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.0
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = +3
Query: 387 HAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARSSVLKG------EILVFK 548
H N P + P +S EL + IS+G+DA S VLK E++V +
Sbjct: 228 HELNESPSTPTAPDFPH-YNSSPSELSPTQRRSSISNGKDAPSPVLKDLTSYTQEVIVCR 286
Query: 549 LIAVDGLSPS 578
LSPS
Sbjct: 287 KFLHHSLSPS 296
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.0 bits (52), Expect = 9.2
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 303 NLTTVFDNDSLRGLPRLAAKGLNLLDNFHA--FNNIPKDNMSAIQPGGLDSGDEELGTIS 476
N+ ++ L G + G NL F A +++ P+ NM P ++ +GT +
Sbjct: 210 NMVEDYNVYGLSGSQQSFRLGNNLTKTFWATGYSDSPEANMYGSHPFYMEQRYIPIGTTN 269
Query: 477 ISTGISHG 500
T SHG
Sbjct: 270 TYTSASHG 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,218
Number of Sequences: 5004
Number of extensions: 55330
Number of successful extensions: 169
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -