Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a14
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0359 + 22508900-22509439 183 1e-46
02_01_0160 + 1116160-1116678 177 8e-45
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 175 3e-44
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 170 9e-43
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 151 6e-37
10_01_0309 + 3417602-3418147 147 7e-36
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 143 1e-34
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 142 2e-34
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 124 6e-29
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 124 6e-29
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 120 1e-27
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 116 1e-26
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 102 2e-22
06_01_0214 + 1634171-1634173,1634263-1634742 98 6e-21
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 95 6e-20
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 81 6e-16
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 78 5e-15
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 73 3e-13
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 58 8e-09
07_03_0359 - 17201711-17201803,17202185-17202332,17202437-172025... 54 1e-07
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 49 4e-06
02_01_0086 + 613113-613532 45 4e-05
11_06_0322 + 22358505-22358642,22358690-22358791,22359444-223595... 37 0.016
01_01_0077 - 585670-585787,585921-586687 35 0.063
11_01_0535 + 4234282-4235082 30 1.3
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 30 1.3
08_02_0053 + 11721658-11721689,11721960-11722710 30 1.8
07_03_1767 + 29338867-29338912,29339261-29339325,29339571-293396... 29 3.1
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 4.1
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 28 5.4
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 27 9.5
>09_06_0359 + 22508900-22509439
Length = 179
Score = 183 bits (445), Expect = 1e-46
Identities = 79/113 (69%), Positives = 98/113 (86%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHR+IPNFM QGGDFT NGTGG+SIYG++F DENF L+HTGPGVLSMANAG +TNGSQF
Sbjct: 62 FHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQF 121
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 300
FI T +T+WLDG+HVVFG VV+G VV+++E GS SG T++R++I+DCGQ+A
Sbjct: 122 FICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLA 174
>02_01_0160 + 1116160-1116678
Length = 172
Score = 177 bits (430), Expect = 8e-45
Identities = 80/113 (70%), Positives = 90/113 (79%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHRVIP FM QGGDFT NGTGG+SIYG KF DE F KH PG+LSMANAG +TNGSQF
Sbjct: 60 FHRVIPEFMCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAGPNTNGSQF 119
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 300
FI TV SWLDG+HVVFG VVEGM+VVK IE GS+ G T+K +VI DCGQ++
Sbjct: 120 FICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQLS 172
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 175 bits (425), Expect = 3e-44
Identities = 77/112 (68%), Positives = 92/112 (82%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHR+IP+FM+QGGDFT +G GG+SIYG KF DENF +KHTGPG+LSMANAG DTNGSQF
Sbjct: 107 FHRIIPSFMIQGGDFTLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANAGRDTNGSQF 166
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 303
FITTV TSWLDG+HVVFG V+ GM+VV +IE G QSG ++VI D G++
Sbjct: 167 FITTVTTSWLDGKHVVFGKVLSGMDVVYKIEAEGQQSGSPKSKVVIADSGEL 218
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 170 bits (413), Expect = 9e-43
Identities = 76/113 (67%), Positives = 92/113 (81%), Gaps = 1/113 (0%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHRVI +FM+QGGDF NGTGGKSIYG F+DENF L HTGPGV+SMANAG +TNGSQF
Sbjct: 135 FHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLVHTGPGVVSMANAGPNTNGSQF 194
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSG-KTSKRIVIKDCGQI 303
FI TVKT WLDGRHVVFG V+EGM++VK IE+ + G + K++VI +CG++
Sbjct: 195 FICTVKTPWLDGRHVVFGQVIEGMDIVKMIESQETDRGDRPKKKVVISECGEL 247
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 151 bits (365), Expect = 6e-37
Identities = 68/112 (60%), Positives = 84/112 (75%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHR+IP FM+QGGD + NGTG SIYG F DENF + H+ PG+LSMAN DTNGSQF
Sbjct: 96 FHRIIPGFMIQGGDTVSGNGTGCDSIYGGMFPDENFKINHSAPGLLSMANYAKDTNGSQF 155
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 303
FITTVK + LDG+HVVFG V+ GM+VV +IE GSQSG +++I D G++
Sbjct: 156 FITTVKLTRLDGKHVVFGKVLSGMDVVYKIEAEGSQSGTPRSKVLISDSGEL 207
>10_01_0309 + 3417602-3418147
Length = 181
Score = 147 bits (356), Expect = 7e-36
Identities = 70/113 (61%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIY---GNKFEDENFTLKHTGPGVLSMANAGADTNG 468
FHRV+P FM QGGD T NGTGG+S F DE F +KH GPGV+SMANAG +TNG
Sbjct: 67 FHRVVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNG 126
Query: 467 SQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 309
SQFFIT K WLDGRHV FG VV GM V+ I+ G+ SGKT K +VI DCG
Sbjct: 127 SQFFITVDKAPWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKPVVITDCG 179
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 143 bits (346), Expect = 1e-34
Identities = 67/112 (59%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = -1
Query: 635 HRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFF 456
HR++ FM+QGGD T +GTGG+SIYG FEDENF LKH G+LSMANAG DTNGSQFF
Sbjct: 105 HRIVKGFMVQGGDITAGDGTGGESIYGLNFEDENFVLKHERKGMLSMANAGPDTNGSQFF 164
Query: 455 ITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFG-SQSGKTSKRIVIKDCGQI 303
ITT +T LDG+HVVFG V++GM VV+ +E +S + IVI DCG++
Sbjct: 165 ITTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRPITDIVIVDCGEL 216
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 142 bits (344), Expect = 2e-34
Identities = 66/113 (58%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHRVI FM+QGGD T +GTGG+SIYG KFEDENF LKH G+LSMAN+G +TNGSQF
Sbjct: 122 FHRVIKGFMVQGGDITAGDGTGGESIYGLKFEDENFVLKHERKGMLSMANSGPNTNGSQF 181
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFG-SQSGKTSKRIVIKDCGQI 303
FITT +T LDG+HVVFG V++GM VV+ +E ++ + + + I DCG++
Sbjct: 182 FITTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTSDVEIVDCGEL 234
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 124 bits (299), Expect = 6e-29
Identities = 65/121 (53%), Positives = 82/121 (67%), Gaps = 3/121 (2%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHRVI FM QGGDF+N +G+GG+SIYG FEDENF L+H G+LSMANAG +TNGSQF
Sbjct: 64 FHRVIKGFMAQGGDFSNGDGSGGESIYGGTFEDENFVLRHDERGLLSMANAGPNTNGSQF 123
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIV---IKDCGQIA*FKS 288
FIT S LD + VFG ++ G +V+K+IE + G S +V I DCG++ K
Sbjct: 124 FITFKHNSRLDRKSTVFGKLILGNDVLKRIE-YVDVHGAGSTPVVPVRIVDCGELVDGKC 182
Query: 287 L 285
L
Sbjct: 183 L 183
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 124 bits (299), Expect = 6e-29
Identities = 55/68 (80%), Positives = 61/68 (89%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHR+I +FM+QGGDF N+NGTGG+SIYG F+DENFTLKHTGPGVLSMANAG DTNGSQF
Sbjct: 115 FHRIIKDFMIQGGDFQNNNGTGGRSIYGECFDDENFTLKHTGPGVLSMANAGPDTNGSQF 174
Query: 458 FITTVKTS 435
FI TVK S
Sbjct: 175 FICTVKFS 182
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 120 bits (289), Expect = 1e-27
Identities = 59/92 (64%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQ 462
FHRVI FM+Q GD +GTGG+SI+G +FEDE + +L+H P LSMANAG +TNGSQ
Sbjct: 537 FHRVIKGFMIQTGDPLG-DGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQ 595
Query: 461 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 366
FFITTV T WLD +H VFG VV+GM+VV+QIE
Sbjct: 596 FFITTVATPWLDNKHTVFGRVVKGMDVVQQIE 627
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 116 bits (280), Expect = 1e-26
Identities = 56/91 (61%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQ 462
FHR+I +F++QGGD T G GG+SIYG KFEDE LKHTG G+LSMANAG +TNGSQ
Sbjct: 51 FHRIIKDFIVQGGDPTG-TGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQ 109
Query: 461 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 369
FFIT LDG+H +FG V +GME+VK++
Sbjct: 110 FFITLAPCQSLDGKHTIFGRVSKGMEIVKRL 140
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 102 bits (245), Expect = 2e-22
Identities = 54/113 (47%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQF 459
FHR+IP FM+QGGD +G G V++MAN+G D+NGSQF
Sbjct: 94 FHRIIPGFMIQGGDIVRGDGKGS---------------------VIAMANSGPDSNGSQF 132
Query: 458 FITTVKTSWLDGRHVVFGNVVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 303
+ITT+KTSWLDG HVVFG V++GM+ V IE G+ +GK K++VI D G+I
Sbjct: 133 YITTIKTSWLDGEHVVFGRVIQGMDYVYAIEGGAGTYNGKPRKKVVITDSGEI 185
>06_01_0214 + 1634171-1634173,1634263-1634742
Length = 160
Score = 97.9 bits (233), Expect = 6e-21
Identities = 50/92 (54%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQ 462
FHR I FM+QGGD T G GG SI+G KF DE +LKH GV+SMAN+G +TNGSQ
Sbjct: 42 FHRNIKGFMIQGGDPTG-TGKGGTSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQ 100
Query: 461 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 366
FFIT K L+G + VF V+ G EV+ +E
Sbjct: 101 FFITYAKQPHLNGHYTVFAKVIHGFEVLDLME 132
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 94.7 bits (225), Expect = 6e-20
Identities = 49/92 (53%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQ 462
FHR I NFM+QGGD T G+GG+SI+G F+DE N L H+G GV+SMAN+G TNGSQ
Sbjct: 386 FHRSIKNFMIQGGDPTG-TGSGGESIWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQ 444
Query: 461 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 366
FFI L+ +H VFG VV G+ + +E
Sbjct: 445 FFILYKSAPHLNFKHTVFGMVVGGLTTLSAME 476
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 81.4 bits (192), Expect = 6e-16
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGAD-TNGS 465
FHRVI +F++QGGD T +GTGG+SIYG F DE T L+ G+++ ANAG +NGS
Sbjct: 54 FHRVIKSFLVQGGDPTG-SGTGGESIYGAPFADEFHTRLRFNHRGLVACANAGTPHSNGS 112
Query: 464 QFFITTVKTSWLDGRHVVFGNV 399
QFFI+ + WLD ++ +FG V
Sbjct: 113 QFFISLDRCDWLDKKNTIFGKV 134
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 78.2 bits (184), Expect = 5e-15
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANA 486
FHRVI +FM+QGGD+ +GTG SIYG KF+DENF KHTGPG+LSM +
Sbjct: 91 FHRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMVRS 141
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = -1
Query: 464 QFFITTVKTSWLDGRHVVFGNVV-EGMEVVKQIETFGSQSGKTSK-RIVIKDCGQI 303
QFFIT K WLD +HVVFG V+ +GM V++IE + K VI +CG++
Sbjct: 200 QFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 255
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 72.5 bits (170), Expect = 3e-13
Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIY----GNK---FEDE-NFTLKHTGPGVLSMANAG 483
FH+V +F+ Q GD T G GG S+Y G++ F+DE L+H+ G ++MA+AG
Sbjct: 42 FHKVEKDFLAQTGDPTG-TGAGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAG 100
Query: 482 ADTNGSQFFIT-TVKTSWLDGRHVVFGNVVEGMEVVKQI-ETFGSQSGKTSKRIVIK 318
+ N SQF+IT +LD +H VFG V EG + + +I ET+ G+ K I IK
Sbjct: 101 ENCNASQFYITLRDDVDYLDDKHTVFGMVAEGFDTLTKISETYVDDKGRPFKDIRIK 157
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Frame = -1
Query: 548 FEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVK-TSWLDGRHVVFGNVVEGMEVVK 375
F+DE + L+H+ G ++MA+AG + N SQF+IT +LD +H VFG V EG + +
Sbjct: 108 FDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYLDDKHTVFGMVAEGFDTIT 167
Query: 374 QI-ETFGSQSGKTSKRIVIK 318
+I ET+ G+ K I I+
Sbjct: 168 KINETYVDDKGRPFKDIRIR 187
>07_03_0359 -
17201711-17201803,17202185-17202332,17202437-17202574,
17204331-17204416,17205233-17205283,17205774-17205858,
17205930-17206081
Length = 250
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = -1
Query: 638 FHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQ 462
F VI NF++QGGDF + NG + I K EN + KH + + N + G
Sbjct: 135 FRHVIKNFVIQGGDF-DFNGAAQEWILKAKASGENALSPKHEAFMIGTTKNP--NNKGFD 191
Query: 461 FFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 366
FITT L+ + VVFG V+ G ++V++IE
Sbjct: 192 LFITTAPIPDLNDKLVVFGQVINGQDIVQEIE 223
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = -1
Query: 446 VKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 300
V TS + +HVVFG VV GM ++K++E GS +GK + + I DCG+++
Sbjct: 87 VSTSCVS-KHVVFGKVVTGMPLLKKLEAVGSDTGKPTCEVKIVDCGEVS 134
>02_01_0086 + 613113-613532
Length = 139
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = -1
Query: 542 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 366
+ENF L H P + N A+ N SQFF + W DG +VVFG ++ G +K IE
Sbjct: 63 NENFLLPHDRPW---LPNGSAENNISQFF---TRVPWFDGNYVVFGCIISGFHNLKAIE 115
>11_06_0322 +
22358505-22358642,22358690-22358791,22359444-22359557,
22359643-22359791,22360155-22360227,22360308-22360397,
22360752-22360791,22361579-22361661,22362614-22362775
Length = 316
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -1
Query: 530 TLKHTGPGVLSMA-NAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 366
T+KH G+LSM ++ ++ GS F I LDG++ VFG + +G + ++++E
Sbjct: 156 TVKHVR-GILSMGRHSDPNSGGSSFSILLGDAPHLDGQYAVFGRLTKGDDTLRKLE 210
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 34.7 bits (76), Expect = 0.063
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 485 GADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 369
G NG++F ITT LD +V G VV+GM+V+ +I
Sbjct: 202 GVVPNGTEFVITTGDAPELDASALVVGRVVDGMDVLGKI 240
>11_01_0535 + 4234282-4235082
Length = 266
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 310 PQSLITILLEVFPDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNW-EPLVSAP 486
P +L L+E WLP + + TT+ ST + T LP++ +L V + PL
Sbjct: 50 PAALAWCLMESPTLWLPPLVLSATTTSLSTPTLRVTILPAALYMLHYVHRTLVHPL---R 106
Query: 487 ALAMERTPGPV-CLRVKFS-SSNLL 555
L + R P P+ L + F S NLL
Sbjct: 107 LLRLRRAPAPMPILIIMFGFSFNLL 131
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 30.3 bits (65), Expect = 1.3
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +3
Query: 330 SLRGLPRLAAKGLNLLDNF--HAFNNIPKDNMSAIQPGGLDSG-DEELGTISISTGISHG 500
SLRGL R+ + G+N L N+ +Q L G EE+G ++ G+ G
Sbjct: 172 SLRGL-RVLSLGMNTLTGSIPSEIGNLANLMTLNLQFSNLTGGIPEEIGDLAGLVGLGLG 230
Query: 501 EDARSSVLKGEILVFKLIAVDGLS-PSAVMVGEVPSLQH 614
+ + + + L A+ LS PSA + G +PSLQ+
Sbjct: 231 SNQLAGSIPASL--GNLSALKYLSIPSAKLTGSIPSLQN 267
>08_02_0053 + 11721658-11721689,11721960-11722710
Length = 260
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Frame = -1
Query: 533 FTLKHTGPGVLSMANAGADTNGS----------QFFITTVKTSW--LDGRHVVFGNVVEG 390
F LKH PG LS+ D + +F +TT LDG+++VFG V+EG
Sbjct: 201 FELKHARPGTLSLCLGQNDDDDDIKLNPNYHNVEFLVTTGPGPCPELDGQNIVFGTVLEG 260
>07_03_1767 +
29338867-29338912,29339261-29339325,29339571-29339642,
29339913-29339956,29340047-29340158,29340879-29340950,
29341449-29341511,29341957-29342034,29342110-29342202,
29342294-29342413,29342762-29342845,29343094-29343309,
29343401-29343448,29343761-29343871,29344170-29344267,
29345004-29345248,29345764-29345832,29345919-29345983,
29346168-29346337,29346434-29346512,29346614-29346869,
29347416-29347461,29347602-29347710,29347820-29347882,
29350075-29350107,29350924-29351442
Length = 991
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 504 DARSSVLKGEILVFKLIAVDGLSPSAVMVGEV 599
DA +V GEIL+ ++ V G++PS V++ ++
Sbjct: 778 DAFVNVQNGEILLIEVNTVPGMTPSTVLIHQI 809
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 373 CLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAM 498
C T ++P +T PK+ L +S L V M+N + S ALA+
Sbjct: 2901 CFTAALPLSTIPKS--LNNSHFALEVTMRNGKKHASLRALAI 2940
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 471 ISISTGISHGEDARSSVLKGEILVF 545
++I T I HG D R+S L GE LVF
Sbjct: 119 LAILTAIFHGVDPRTSFLIGEGLVF 143
>03_06_0769 +
36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 390 AFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDA 509
A + P N S I G D+ + L T+SIS G ++GEDA
Sbjct: 263 ARSEFPPFNASGIMFMG-DNMKQNLETLSISNGDANGEDA 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,940,054
Number of Sequences: 37544
Number of extensions: 365281
Number of successful extensions: 939
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -