Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a13
(197 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 1.0
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 24 2.4
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 24 2.4
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 24 3.2
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc... 23 4.2
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 23 5.6
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 23 7.4
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 23 7.4
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 23 7.4
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 22 9.7
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 22 9.7
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 72 KEILRSRVIDHDYEP 28
KE+L+ VIDHD EP
Sbjct: 1076 KELLQEVVIDHDLEP 1090
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 87 TCAGCEGGRDPKSQPRTN 140
TCA C DP SQ R N
Sbjct: 432 TCAICRAPVDPNSQQRNN 449
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 180 DNFEWLEGYTERFGLYEVDFSDPARP 103
D F++L+ Y F + D SDP P
Sbjct: 150 DGFKFLQDYQNTFDVIITDSSDPDGP 175
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 23.8 bits (49), Expect = 3.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 180 DNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYKEILRSRVIDHDYE 31
+NF +G+ + F + F D + SA + KE L SR+ D+D++
Sbjct: 61 ENFMKRKGFDD-FASFIRPFGDRIFQSSTNNSA-ISKETLDSRIFDNDHD 108
>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 120 KSQPRTNRNVRCIL 161
K+QPR NRN+R I+
Sbjct: 25 KAQPRRNRNLRQII 38
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 23.0 bits (47), Expect = 5.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 156 YTERFGLYEVDFSDPARPRTPRKSAFVYKEILRSRVIDHDYE 31
+TE+ E + + K+ K I R R ID+DYE
Sbjct: 59 FTEQIETSETSKTQDSEGNKVDKNLKENKSIRRKRSIDNDYE 100
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 22.6 bits (46), Expect = 7.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 125 STSYKPKRSVYPSNHSKLSIRLQA 196
S S P RS PS S+++ LQA
Sbjct: 474 SMSQSPSRSDLPSKISRVNAELQA 497
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 22.6 bits (46), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 148 TFRFVRG*LFGSRPPSHPAQVRLRLQGDLEKQGHRPRL 35
TF +RG G + P++ A+ ++ DLEK PR+
Sbjct: 241 TFIILRG---GKKGPNYDAEHVAAVRKDLEKANLPPRI 275
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 22.6 bits (46), Expect = 7.4
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 108 RPRTPRKSAFVYKEILRSRVIDHDY--EPNTTVMTID 4
RP + R + + +++L + + DY +PNT+ +TID
Sbjct: 596 RPVSERYNEQIAEDVLCDILDEIDYAEDPNTSSVTID 632
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 101 RGRAGSEKSTSYKPKRS 151
+G ++S SY PKRS
Sbjct: 550 KGHVPQQRSVSYTPKRS 566
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 22.2 bits (45), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 156 YTERFGLYEVDFSDPARPRTPRKSAFVYKEILRSRVI 46
YT+ GL V DP RP + S + + ILR+R +
Sbjct: 98 YTQ--GLRMVHKMDPLRPVLKKVSQRLNERILRTRPV 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,259
Number of Sequences: 5004
Number of extensions: 10463
Number of successful extensions: 41
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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