Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a13
         (197 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069733-1|AAL39878.1|  541|Drosophila melanogaster LP05116p pro...    74   3e-14
AE014296-2793|AAF49418.2|  541|Drosophila melanogaster CG9701-PA...    74   3e-14
AY051849-1|AAK93273.1|  403|Drosophila melanogaster LD35155p pro...    27   2.7  
AE014298-2477|AAF48663.1|  403|Drosophila melanogaster CG9609-PA...    27   2.7  
AY071020-1|AAL48642.1|  147|Drosophila melanogaster RE10288p pro...    27   4.8  
AE014297-4707|AAF57117.2|  147|Drosophila melanogaster CG15554-P...    27   4.8  
AE014296-2343|AAF49771.3| 2294|Drosophila melanogaster CG32133-P...    26   6.3  

>AY069733-1|AAL39878.1|  541|Drosophila melanogaster LP05116p
           protein.
          Length = 541

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 29/56 (51%), Positives = 41/56 (73%)
 Frame = -3

Query: 195 AWSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYKEILRSRVIDHDYEP 28
           AWSLMD++EW  G++E+FGLY VDF+ P R RTP+ SA V+ ++ ++  ID  Y P
Sbjct: 445 AWSLMDSYEWKAGFSEKFGLYHVDFNSPQRTRTPKISARVFAQLCKTNTIDWSYRP 500


>AE014296-2793|AAF49418.2|  541|Drosophila melanogaster CG9701-PA
           protein.
          Length = 541

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 29/56 (51%), Positives = 41/56 (73%)
 Frame = -3

Query: 195 AWSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYKEILRSRVIDHDYEP 28
           AWSLMD++EW  G++E+FGLY VDF+ P R RTP+ SA V+ ++ ++  ID  Y P
Sbjct: 445 AWSLMDSYEWKAGFSEKFGLYHVDFNSPQRTRTPKISARVFAQLCKTNTIDWSYRP 500


>AY051849-1|AAK93273.1|  403|Drosophila melanogaster LD35155p
           protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 104 GRAGSEKSTSYKPKRSVYPSNHSKLS 181
           G  G  KSTS K +R    S HS+LS
Sbjct: 326 GEGGKTKSTSRKRRRDAGRSKHSRLS 351


>AE014298-2477|AAF48663.1|  403|Drosophila melanogaster CG9609-PA
           protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 104 GRAGSEKSTSYKPKRSVYPSNHSKLS 181
           G  G  KSTS K +R    S HS+LS
Sbjct: 326 GEGGKTKSTSRKRRRDAGRSKHSRLS 351


>AY071020-1|AAL48642.1|  147|Drosophila melanogaster RE10288p
           protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 124 LFGSRPPSHPAQVRLRLQGDLEK 56
           ++G+ PPS  AQ+R  +QG LE+
Sbjct: 34  VYGTPPPSTMAQLRRIIQGHLER 56


>AE014297-4707|AAF57117.2|  147|Drosophila melanogaster CG15554-PA
           protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 124 LFGSRPPSHPAQVRLRLQGDLEK 56
           ++G+ PPS  AQ+R  +QG LE+
Sbjct: 34  VYGTPPPSTMAQLRRIIQGHLER 56


>AE014296-2343|AAF49771.3| 2294|Drosophila melanogaster CG32133-PA
            protein.
          Length = 2294

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 109  PPSHPAQVRLRLQGDLEKQGHRPRLRAQHY 20
            PP    Q +L LQ   +   H P+++ QH+
Sbjct: 1234 PPQQQQQQQLLLQQQQQSPQHHPQMQQQHW 1263


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.317    0.136    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,825,021
Number of Sequences: 53049
Number of extensions: 120805
Number of successful extensions: 501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 24,988,368
effective HSP length: 45
effective length of database: 22,601,163
effective search space used: 452023260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)