Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a13
(197 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 63 2e-11
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 52 4e-08
AF077537-1|AAC26273.2| 111|Caenorhabditis elegans Hypothetical ... 27 1.4
Z49132-12|CAA88990.3| 931|Caenorhabditis elegans Hypothetical p... 25 5.6
Z48716-7|CAA88602.3| 931|Caenorhabditis elegans Hypothetical pr... 25 5.6
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 25 7.4
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 25 7.4
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 25 7.4
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 25 7.4
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 25 7.4
Z46266-16|CAD44094.1| 1088|Caenorhabditis elegans Hypothetical p... 25 9.8
Z46266-15|CAA86420.1| 956|Caenorhabditis elegans Hypothetical p... 25 9.8
Z46266-14|CAA86419.1| 1048|Caenorhabditis elegans Hypothetical p... 25 9.8
Z46266-13|CAA86418.1| 1137|Caenorhabditis elegans Hypothetical p... 25 9.8
Z46266-12|CAA86415.1| 1259|Caenorhabditis elegans Hypothetical p... 25 9.8
Z46266-11|CAA86417.1| 1170|Caenorhabditis elegans Hypothetical p... 25 9.8
Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical p... 25 9.8
Z46266-9|CAO78710.1| 790|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z46266-8|CAJ30221.1| 826|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z46266-4|CAA86414.2| 787|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z37979-7|CAD44150.1| 1088|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z37979-6|CAA86038.1| 956|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z37979-5|CAA86037.1| 1048|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z37979-4|CAA86036.1| 1137|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z37979-3|CAA86033.1| 1259|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z37979-2|CAA86035.1| 1170|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical pr... 25 9.8
AB011280-1|BAA24960.1| 1120|Caenorhabditis elegans GAP-2-4 protein. 25 9.8
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 63.3 bits (147), Expect = 2e-11
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = -3
Query: 192 WSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYKEILR 58
W+LMDNFEW +G+ +FGL EVDF P + RT +KSA+ YKE ++
Sbjct: 423 WTLMDNFEWDDGFELKFGLCEVDFESPDKTRTMKKSAYFYKEFIK 467
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 52.4 bits (120), Expect = 4e-08
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = -3
Query: 192 WSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYKEILR 58
W+LMDNFEW +G+ +FG+ VDF P + RT + SA Y+ +R
Sbjct: 426 WTLMDNFEWDDGFGVKFGICRVDFDSPDKTRTMKYSAKYYQTFIR 470
>AF077537-1|AAC26273.2| 111|Caenorhabditis elegans Hypothetical
protein F16G10.5 protein.
Length = 111
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 151 RTFRFVRG*LFGSRPPSHPAQVRLRLQGDLEKQGHRPRLRAQ 26
R R+VRG PP P + R RLQ ++++ R+R++
Sbjct: 30 REGRWVRGAREDREPPPPPRRPRTRLQVRVDREAAEARMRSR 71
>Z49132-12|CAA88990.3| 931|Caenorhabditis elegans Hypothetical
protein F59B10.1 protein.
Length = 931
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 99 TPRKSAFVYKEILRSRVIDHDYEPNTT-VMTIDE 1
T R++A + +L+ RV+D+ Y+P + +DE
Sbjct: 492 TERETAEAIENLLKLRVVDYRYKPEVADIWGLDE 525
>Z48716-7|CAA88602.3| 931|Caenorhabditis elegans Hypothetical
protein F59B10.1 protein.
Length = 931
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 99 TPRKSAFVYKEILRSRVIDHDYEPNTT-VMTIDE 1
T R++A + +L+ RV+D+ Y+P + +DE
Sbjct: 492 TERETAEAIENLLKLRVVDYRYKPEVADIWGLDE 525
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 111 RDPKSQPRTNRNVRCILPTIRSYPSDSR 194
RDP ++PR R LPT+ S +++R
Sbjct: 876 RDPFAEPRNGRGRNDGLPTLASADNETR 903
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 111 RDPKSQPRTNRNVRCILPTIRSYPSDSR 194
RDP ++PR R LPT+ S +++R
Sbjct: 878 RDPFAEPRNGRGRNDGLPTLASADNETR 905
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 180 DNFEWLEGYTERFGLYEVDFSDPARP 103
D FE+L+ + F + D SDP P
Sbjct: 170 DGFEFLKNHKNEFDVIITDSSDPVGP 195
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 180 DNFEWLEGYTERFGLYEVDFSDPARP 103
D FE+L+ + F + D SDP P
Sbjct: 170 DGFEFLKNHKNEFDVIITDSSDPVGP 195
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 119 EKSTSYKPKRSVYPSNHSK 175
EK TSY K Y +NH K
Sbjct: 678 EKKTSYAEKAQQYQNNHKK 696
>Z46266-16|CAD44094.1| 1088|Caenorhabditis elegans Hypothetical
protein ZK899.8h protein.
Length = 1088
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 980 PRTNPRASRNSTLLRPSVVNVPDD 1003
>Z46266-15|CAA86420.1| 956|Caenorhabditis elegans Hypothetical
protein ZK899.8f protein.
Length = 956
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 848 PRTNPRASRNSTLLRPSVVNVPDD 871
>Z46266-14|CAA86419.1| 1048|Caenorhabditis elegans Hypothetical
protein ZK899.8e protein.
Length = 1048
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 940 PRTNPRASRNSTLLRPSVVNVPDD 963
>Z46266-13|CAA86418.1| 1137|Caenorhabditis elegans Hypothetical
protein ZK899.8d protein.
Length = 1137
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1029 PRTNPRASRNSTLLRPSVVNVPDD 1052
>Z46266-12|CAA86415.1| 1259|Caenorhabditis elegans Hypothetical
protein ZK899.8c protein.
Length = 1259
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1151 PRTNPRASRNSTLLRPSVVNVPDD 1174
>Z46266-11|CAA86417.1| 1170|Caenorhabditis elegans Hypothetical
protein ZK899.8b protein.
Length = 1170
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1062 PRTNPRASRNSTLLRPSVVNVPDD 1085
>Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical
protein ZK899.8a protein.
Length = 1207
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1099 PRTNPRASRNSTLLRPSVVNVPDD 1122
>Z46266-9|CAO78710.1| 790|Caenorhabditis elegans Hypothetical
protein ZK899.8j protein.
Length = 790
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 682 PRTNPRASRNSTLLRPSVVNVPDD 705
>Z46266-8|CAJ30221.1| 826|Caenorhabditis elegans Hypothetical
protein ZK899.8i protein.
Length = 826
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 718 PRTNPRASRNSTLLRPSVVNVPDD 741
>Z46266-4|CAA86414.2| 787|Caenorhabditis elegans Hypothetical
protein ZK899.8g protein.
Length = 787
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 679 PRTNPRASRNSTLLRPSVVNVPDD 702
>Z37979-7|CAD44150.1| 1088|Caenorhabditis elegans Hypothetical protein
ZK899.8h protein.
Length = 1088
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 980 PRTNPRASRNSTLLRPSVVNVPDD 1003
>Z37979-6|CAA86038.1| 956|Caenorhabditis elegans Hypothetical
protein ZK899.8f protein.
Length = 956
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 848 PRTNPRASRNSTLLRPSVVNVPDD 871
>Z37979-5|CAA86037.1| 1048|Caenorhabditis elegans Hypothetical protein
ZK899.8e protein.
Length = 1048
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 940 PRTNPRASRNSTLLRPSVVNVPDD 963
>Z37979-4|CAA86036.1| 1137|Caenorhabditis elegans Hypothetical protein
ZK899.8d protein.
Length = 1137
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1029 PRTNPRASRNSTLLRPSVVNVPDD 1052
>Z37979-3|CAA86033.1| 1259|Caenorhabditis elegans Hypothetical protein
ZK899.8c protein.
Length = 1259
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1151 PRTNPRASRNSTLLRPSVVNVPDD 1174
>Z37979-2|CAA86035.1| 1170|Caenorhabditis elegans Hypothetical protein
ZK899.8b protein.
Length = 1170
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1062 PRTNPRASRNSTLLRPSVVNVPDD 1085
>Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical protein
ZK899.8a protein.
Length = 1207
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1099 PRTNPRASRNSTLLRPSVVNVPDD 1122
>Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical protein
ZK899.8a protein.
Length = 1207
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1099 PRTNPRASRNSTLLRPSVVNVPDD 1122
>AB011280-1|BAA24960.1| 1120|Caenorhabditis elegans GAP-2-4 protein.
Length = 1120
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 117 PKSQPRTNRNVRCILPTIRSYPSD 188
P++ PR +RN + P++ + P D
Sbjct: 1029 PRTNPRASRNSTLLRPSVVNVPDD 1052
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.136 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,911,210
Number of Sequences: 27780
Number of extensions: 57888
Number of successful extensions: 195
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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