Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a13
         (197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   0.61 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   0.80 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   1.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   1.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   1.1  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   1.4  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   1.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   2.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   2.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    19   4.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    19   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   5.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   5.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   7.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   7.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    18   9.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    18   9.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    18   9.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    18   9.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    18   9.9  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 0.61
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 109 PPSHPAQVRLRLQGDLEKQGHRP 41
           PP+ PA++R   + + E   +RP
Sbjct: 25  PPTRPARLRREAKPEAEPGNNRP 47



 Score = 19.0 bits (37), Expect = 5.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 109 PPSHPAQVRLRLQGDLEKQGHRP 41
           P   P   RLR + + E   +RP
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRP 129



 Score = 19.0 bits (37), Expect = 5.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 109 PPSHPAQVRLRLQGDLEKQGHRP 41
           P   P   RLR + + E   +RP
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRP 155


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 150 RCILPTIRSYP 182
           RC+L T+R YP
Sbjct: 402 RCLLETLRMYP 412


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 39  DYEPNTTVMTID 4
           DY+P  T MTID
Sbjct: 232 DYDPKFTKMTID 243


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 39  DYEPNTTVMTID 4
           DY+P  T MTID
Sbjct: 232 DYDPKFTKMTID 243


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 39  DYEPNTTVMTID 4
           DY+P  T MTID
Sbjct: 232 DYDPKFTKMTID 243


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 109 PPSHPAQVRLRLQGDLEKQGHRP 41
           PP+ P ++R   + + E   +RP
Sbjct: 25  PPTRPTRLRREAEPEAEPGNNRP 47


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 109 PPSHPAQVRLRLQGDLEKQGHRP 41
           PP+ P ++R   + + E   +RP
Sbjct: 24  PPTRPTRLRREAKPEAEPGNNRP 46


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 156 YTERFGLYEVDFSDPARPRTPRKS 85
           Y++RF    VD   P+  R+P  S
Sbjct: 24  YSKRFSSSIVDRRSPSSSRSPSPS 47


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 167 GWKDTPNV 144
           GWK+ PNV
Sbjct: 385 GWKELPNV 392


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 39  DYEPNTTVMTID 4
           DY+P    MTID
Sbjct: 230 DYDPRYAKMTID 241


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 104 GRAGSEKSTSYKPKRSVYPS 163
           G+  S+KS   +P+RS+Y S
Sbjct: 368 GKWSSQKS---EPRRSIYSS 384


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 113  GSEKSTSYKPKRSVYPSNHSKLSIR 187
            G EKS  +      + SNH  L++R
Sbjct: 1027 GEEKSRLFHYSVVPFVSNHDILNLR 1051


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 119 EKSTSYKPKRSVY 157
           +KSTS KP+R  +
Sbjct: 433 KKSTSKKPRRKFH 445


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 63  LRSRVIDHDY 34
           LR  +IDH Y
Sbjct: 656 LRGSIIDHSY 665


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 63  LRSRVIDHDY 34
           LR  +IDH Y
Sbjct: 694 LRGSIIDHSY 703


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 109 PPSHPAQVRLRL 74
           PPS P    LRL
Sbjct: 237 PPSRPTDKALRL 248


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 4/7 (57%), Positives = 6/7 (85%)
 Frame = -1

Query: 182 WITSNGW 162
           W+ S+GW
Sbjct: 227 WLASDGW 233


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 87  TCAGCEG 107
           TC GC+G
Sbjct: 203 TCEGCKG 209


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 182 WITSNGW 162
           WI S+GW
Sbjct: 372 WIGSDGW 378


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 4/7 (57%), Positives = 6/7 (85%)
 Frame = -1

Query: 182 WITSNGW 162
           W+ S+GW
Sbjct: 317 WLASDGW 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,191
Number of Sequences: 438
Number of extensions: 777
Number of successful extensions: 22
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)