Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a11
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.9  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   3.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 125 LRESLDTRILSTCTFNLLKIMRMVYLLLKHLFVYSYLWN 9
           L +  DT++  TC F    ++ +++++L +  + S + N
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRN 249


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 378 MKHFLFRKLKWNFRYCFKQYC 440
           M +F  + LK +F   F+QYC
Sbjct: 2   MDNFTLQSLKKDFGTYFQQYC 22


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 125 LRESLDTRILSTCTFNLLKIMRMVYLLLKHLFVYSYLWN 9
           L +  DT++  TC F    ++ +++++L +  + S + N
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRN 249


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 125 LRESLDTRILSTC 87
           +RESLDT+ L  C
Sbjct: 334 IRESLDTQFLQVC 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,031
Number of Sequences: 438
Number of extensions: 3771
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)