Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a10
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 74 2e-14
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 51 1e-07
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 34 0.016
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 33 0.037
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 30 0.26
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 30 0.34
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 2.4
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 27 3.2
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.2
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 26 4.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 9.8
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 74.1 bits (174), Expect = 2e-14
Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 8/143 (5%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLE-AVKKLGVPAQETFQ 480
+L + L+ G +LC++ E +++ ++ M F MENI+AF+ A + + VP+Q+ FQ
Sbjct: 26 DLLDQLQSGVILCRICKEALGANIR-YKESNMPFVQMENISAFINYAQQVVHVPSQDMFQ 84
Query: 479 TIDLWERQNLYSVVVCLQSLGRKAGNF--GK-PSIGPKEADKNVRDFS-EEQLKAGQNVI 312
T DL+ER+N V+ + S R A GK +GPK A+K R FS ++Q + + V
Sbjct: 85 TSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQREFREGVN 144
Query: 311 SLQYGTNKGQQSG---ISFGNRR 252
SLQYG+ G I+F RR
Sbjct: 145 SLQYGSFDMPTQGTEKIAFSRRR 167
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = -2
Query: 641 LKDGTLLCKLVNELQPGSVKKINQTT-MAFKCMENINAFLEAVKKLGVPAQETFQTIDLW 465
L++G +L LV + QP + KI + + F+ +NIN FL+ + +G+P F+ D++
Sbjct: 69 LRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIY 128
Query: 464 ERQNLYSVVVCLQSL 420
E +NL V+ C+ +L
Sbjct: 129 EGKNLPKVIYCIHAL 143
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Frame = -2
Query: 650 YEVLKDGTLLCKLVNELQPGSV-------KKINQTTMAFKCMENINAFLEAVKKLG 504
++ KDG +L KL+N+ P ++ ++ N+ FKC+EN N + + K +G
Sbjct: 146 FDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 33.1 bits (72), Expect = 0.037
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNELQPGSVKKIN-QTTMAFKCMENINAFLEAVKKLGVPAQETF 483
D+ + L +G +LC+L + P + ++ + +NAF + +G+ F
Sbjct: 86 DDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPFRF 145
Query: 482 QTIDLWERQNLYSVVVCLQSL 420
+T DL R N+ V+ CL +L
Sbjct: 146 ETKDLVRRFNIPKVIYCLHAL 166
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 30.3 bits (65), Expect = 0.26
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQETFQT 477
NLYE D + L K+ P K + KC+ +N ++E VKK G A E F+
Sbjct: 78 NLYESTHDISELHKIT----PILASKFLELEEQNKCLNTVNKYMEVVKKYGNKADE-FKA 132
Query: 476 IDL 468
+ L
Sbjct: 133 LKL 135
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTT-MAFKCMENINAFLEAVKKLGVP 498
+L + L DG LL +L+ + ++ + N+ M +EN+N LE +K G+P
Sbjct: 32 DLRKDLSDGILLIQLLEIIGDENLGRYNRNPRMRVHRLENVNKALEYIKSKGMP 85
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/59 (18%), Positives = 29/59 (49%)
Frame = -2
Query: 665 DADNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQE 489
+ + +Y + + + LV+E + GS++ + T+ F C + +L + + +P +
Sbjct: 810 EVEGIYRISGSASQVRVLVDEFENGSIRMEHLTSDLFACTSVLKTYLHRLPEPVIPGTQ 868
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 299 RTVAISRSDRLSAAPRRSRAHSCPPP 376
R+ RS RLSA+PRRS P P
Sbjct: 96 RSAVQERSKRLSASPRRSSLTDTPLP 121
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 335 AAPRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGR 487
A+P ++ +CP P W R Y+ G VD+ G + + W G+
Sbjct: 48 ASPVSTKTATCPDPSWEWAWQRWYI-DMSGDVDESGWQYGFSFTMNNWHGK 97
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 368 DKNVRDFSEEQLKAGQNVISLQYGTNKGQQSGISF 264
D + D+ +Q AG + ++L+YG N Q +F
Sbjct: 179 DAAITDYFRKQYAAGVDQLTLRYGANPHQSPAQAF 213
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 9.8
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQETFQT 477
N+++ DG + L E Q S+ + +K +E N L+ +KK+ VPA E+ +
Sbjct: 57 NVFDDFDDGYAI-DLTEEHQSSSLNNLK-----WKDVEGPN-ILKPIKKIAVPASESEED 109
Query: 476 IDLWERQNLYSV-VVCLQSLGRKAGNFGKPSIGPKEADKNV 357
D + + L + + QS A N ++ + NV
Sbjct: 110 FDDVDEEMLRAAEMEVFQSCQPLAVNTADTTVSHSTSSSNV 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,029
Number of Sequences: 5004
Number of extensions: 58841
Number of successful extensions: 184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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