Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a10
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0997 + 7884974-7885043,7885689-7885975,7886056-7886311,788... 47 2e-05
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 43 2e-04
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 40 0.002
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 36 0.029
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 36 0.038
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 34 0.088
01_06_0675 + 31092877-31092916,31093349-31093503,31093570-310936... 33 0.20
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 32 0.36
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 32 0.47
11_04_0037 - 12642141-12642239,12643352-12643618,12643682-126437... 31 0.62
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 30 1.4
12_02_0339 - 17721664-17722407,17722921-17723556 30 1.9
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 30 1.9
03_06_0241 - 32587492-32587581,32587673-32587750,32588502-32589422 30 1.9
03_05_0141 - 21210176-21212140 30 1.9
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 30 1.9
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 29 2.5
01_06_0650 + 30872350-30872736,30873388-30873639,30873723-308738... 29 2.5
03_06_0032 + 31182115-31182390,31182801-31183459,31183597-311837... 29 4.4
01_06_0922 - 33022709-33023545 29 4.4
12_02_0887 + 24018847-24019281 28 5.8
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 28 5.8
03_02_0314 + 7398247-7400877 28 5.8
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 28 7.7
04_03_0996 + 21533874-21534469,21534963-21535041 28 7.7
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 28 7.7
>01_01_0997 +
7884974-7885043,7885689-7885975,7886056-7886311,
7886455-7886537,7886634-7886687,7887941-7888012,
7889093-7889155,7889274-7889324,7889432-7889513,
7889606-7889701,7889774-7889944,7890024-7890130,
7890229-7890326,7890798-7891048,7891235-7891398,
7891689-7891979,7892067-7892377,7892477-7892655,
7893231-7893301
Length = 918
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 7/71 (9%)
Frame = -2
Query: 641 LKDGTLLCKLVNELQPGSVKKI-------NQTTMAFKCMENINAFLEAVKKLGVPAQETF 483
+++G +LCK +N++QPG+V K+ +Q + AF+ ENI FL AV++L +P F
Sbjct: 56 VRNGIVLCKAINKIQPGAVPKVVANASCDSQPSTAFQYFENIRNFLVAVQELKLPC---F 112
Query: 482 QTIDLWERQNL 450
+ DL E+ N+
Sbjct: 113 EASDL-EKDNI 122
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Frame = -2
Query: 641 LKDGTLLCKLVNELQPGSVKKI---------NQTTMAFKCMENINAFLEAVKKLGVPAQE 489
L++G +LC +N++QPGSV K+ A++ EN+ FL ++ LG+P
Sbjct: 88 LRNGIVLCNALNKVQPGSVPKVVEAPSDSADGAALCAYQYFENVRNFLMGLQDLGLP--- 144
Query: 488 TFQTIDLWERQNLYSVVVCLQSL 420
TF+ DL + VV C+ SL
Sbjct: 145 TFEASDLEKGGKGVRVVDCVLSL 167
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNELQPGSVKKI-NQTTMAFKCMENINAFLEAVKKLGVPAQETF 483
D L E+L DGT+LC +VN L PG +++ + + ++ FL V +G+P F
Sbjct: 40 DELRELLSDGTVLCHIVNALIPGVLEESWGAYASSDQHAGHVKKFLAVVADMGLPG---F 96
Query: 482 QTIDLWERQNLYSVVVCL 429
DL E ++ VV CL
Sbjct: 97 SVKDL-EEGSMSGVVDCL 113
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNELQPGSV--KKINQTTM--AFKCMENINAFLEAVKKLG 504
D+L+ + KDG LLCKL+N PG++ + IN + ++ EN L + K +G
Sbjct: 187 DHLFHLTKDGVLLCKLINLAVPGTIDERAINTKKLLNLWEKNENHTLCLNSAKAIG 242
>02_02_0157 -
7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 35.5 bits (78), Expect = 0.038
Identities = 28/88 (31%), Positives = 44/88 (50%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQETFQ 480
++L L G LLC L+ L PG++ T +N+ F AV+++GV F
Sbjct: 45 EDLRAALATGRLLCALLRRLCPGALLDDAST-------DNVGRFRAAVERMGV---AKFS 94
Query: 479 TIDLWERQNLYSVVVCLQSLGRKAGNFG 396
DL ER + +VV C+ +L + G+ G
Sbjct: 95 ASDL-ERGQMTAVVNCILALKDRFGSRG 121
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNELQPGSV--KKINQTTM--AFKCMENINAFLEAVKKLG 504
+ L+++++DG LLCKL+N PG++ + IN+ + ++ EN L + K +G
Sbjct: 160 NQLFDLVRDGVLLCKLINLAVPGTIDERAINKKRVLNPWERNENHTLCLNSAKAIG 215
>01_06_0675 +
31092877-31092916,31093349-31093503,31093570-31093677,
31094283-31094487,31094858-31094955,31095052-31095135,
31095227-31095304,31095462-31095554,31095646-31095675,
31095932-31096273,31096353-31096434,31096527-31096622,
31096728-31096907,31097002-31097108,31097207-31097308,
31097611-31097666,31097749-31098002,31098077-31098240,
31098564-31098747,31098825-31098969,31099561-31099661,
31099803-31099870
Length = 923
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQETFQ 480
+ L + L +G LC + ++L PG V + A N+ FL V ++G+P F
Sbjct: 40 EELRDYLINGEALCYVADKLMPG-VLEGTWGGYASDQRSNVKKFLSVVAEMGLPG---FG 95
Query: 479 TIDLWERQNLYSVVVCLQSL 420
DL E ++ S+V CL +L
Sbjct: 96 VKDL-EEGSMSSIVECLLAL 114
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 32.3 bits (70), Expect = 0.36
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNELQPGSV 585
++++ +++DG LLCKL+N PG++
Sbjct: 157 NDIFNLVRDGVLLCKLINVAVPGTI 181
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNELQPGSV--KKINQ--TTMAFKCMENINAFLEAVKKL 507
+NL+E ++ G +L ++++++ PG V K+ ++ M F+ +EN N +E K+L
Sbjct: 417 NNLFEDVRTGWVLLEVLDKISPGIVNWKQASKPPIIMPFRKVENGNQVIEIGKEL 471
>04_04_0179 -
23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 31.9 bits (69), Expect = 0.47
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Frame = -2
Query: 641 LKDGTLLCKLVNELQPGSVKKINQTTM------------AFKCMENINAFLEAVKKLGVP 498
L++G +LC ++N + PG+V K+ + + A + EN+ FL AV ++ +
Sbjct: 57 LRNGLVLCNVLNHVNPGAVPKVVENPIVAVQSSDVAAQSAIQYFENMRNFLVAVSEMNL- 115
Query: 497 AQETFQTIDLWERQNLYSVVVCLQSL 420
TF+ D+ + + VV C+ L
Sbjct: 116 --LTFEASDIEKGGSSMKVVDCILCL 139
>11_04_0037 -
12642141-12642239,12643352-12643618,12643682-12643750,
12643919-12644116,12644262-12644267
Length = 212
Score = 31.5 bits (68), Expect = 0.62
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -2
Query: 563 MAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGRKAGNFGKPSI 384
MAF C N+ FL AVK + A + +D +RQ + VVV L G + G K
Sbjct: 79 MAFACC-NLTVFLTAVKWIDSGALGEEEVVDEKQRQRQHKVVVGLAVAGGEHGAARKQGK 137
Query: 383 GPKEAD 366
+ AD
Sbjct: 138 QSRVAD 143
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGS---VKKINQTTMAFKCMENINAFLEAVKKLGVPAQE 489
NL+E L+DG +LC+++ L + +K I + K + N ++ +K+ G P +
Sbjct: 410 NLFEDLQDGIILCRIIQLLTSDASIILKVIAPSDTYKKRLHNCTMAIQYIKQAGFPLSD 468
>12_02_0339 - 17721664-17722407,17722921-17723556
Length = 459
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 467 WERQNLYSVVVCLQSLGRKAGNFGKPSIGP-KEADKNVRDFSEEQLKA 327
W R ++Y V C++ L R+A S+GP D N+ + + +A
Sbjct: 39 WRRHSIYRVPACIKDLNRRAYQPQVVSLGPFHHGDPNLLPMEDHKRRA 86
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 323 DRLSAAPRRSRAHSCPPPWARWT---ACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSP 493
D LS+ RR+ AH P P+ + A PS T PPS S++ SGR P
Sbjct: 48 DLLSSLWRRAFAHPLPAPFPNLSGEPAPTPRAPSRHATPSSSPPSTPSSASAPPPSGRHP 107
>03_06_0241 - 32587492-32587581,32587673-32587750,32588502-32589422
Length = 362
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 410 PSYRGTVDKRPPSKGSASPKDQWSGRSPERAR 505
PS R +V +RPP++ W G +PE R
Sbjct: 9 PSSRRSVKRRPPARSPELSPKAWGGEAPELIR 40
>03_05_0141 - 21210176-21212140
Length = 654
Score = 29.9 bits (64), Expect = 1.9
Identities = 33/77 (42%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +2
Query: 323 DRLSAAPRRSRAHSC--PPPWARWTA-CRSYLPSYRGTV--DKRPPSKGSASPKDQWSGR 487
D L AAPRRSR+ S PP R TA RS LP+ + D P SA K S
Sbjct: 19 DPLHAAPRRSRSPSTSRPPSRHRRTASARSTLPAAARDLLADDPTPRAFSALLKAASSSA 78
Query: 488 SPERARLAS*LPLGKRL 538
SP R S L LG +L
Sbjct: 79 SPPRR--PSSLGLGAQL 93
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 422 LGRKAGNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQY 300
+G + G+F P +EA + R F+ + + G+ V+S+QY
Sbjct: 173 MGFRVGSFAAPFTRAEEAAMSTRRFAPVETQLGRLVVSVQY 213
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +2
Query: 308 AISRSDRLSAAPRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPK 469
A RS S +P+RS +HSC P R SY P R +R PS+ +S K
Sbjct: 252 ARGRSYSRSVSPQRSYSHSCSPDSQR---SGSYSP--RKRYSERKPSRSRSSGK 300
>01_06_0650 +
30872350-30872736,30873388-30873639,30873723-30873818,
30874005-30874173,30874452-30874552,30874910-30875002,
30876018-30876089,30876509-30876628,30876709-30876759,
30877621-30877809,30878099-30878266
Length = 565
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 314 SRSDRLSAAPRRSRAHSCPP-PWARWTACRSYLPSYRGTVDKRPPSKGSASP 466
SRS +L AA RS CPP P A TA L S+RG PS+ + P
Sbjct: 13 SRSPQLGAALIRSAPMRCPPLPAAAPTAS---LLSWRGFTPSSEPSRSAPPP 61
>03_06_0032 +
31182115-31182390,31182801-31183459,31183597-31183740,
31184025-31184061
Length = 371
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = +2
Query: 275 PTAGPC*CRTVAISRSDRLSAAPRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKG 454
PTA P + +S AP+ S A+ PPP + A P G P G
Sbjct: 66 PTAAPWAVEEDVAAAPPGISLAPQFSMANYAPPPSYQHPATLVSPPLAAGLHPYPPYLHG 125
Query: 455 SASPKDQWSGR 487
+P QW R
Sbjct: 126 VDAPPPQWPPR 136
>01_06_0922 - 33022709-33023545
Length = 278
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +2
Query: 308 AISRSDRLSAAP-----RRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKD 472
AISR DR +AA R +RA + PPP R RS S + P + +ASP
Sbjct: 143 AISRRDRAAAAAYGVRSRSARASASPPP-RREQRDRSVRRSPSPAAKRTPEQRRAASPAP 201
Query: 473 QWSGRSPERAR 505
+ P R
Sbjct: 202 SLQRKPPVPVR 212
>12_02_0887 + 24018847-24019281
Length = 144
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 419 RGTVDKRPPSKGSASPKDQWSGRSPERARLAS*LPLGKRLCS 544
R + +PPS + +P+D+ R +R +A+ L +R+ S
Sbjct: 86 RDSTPVKPPSPSAVTPRDEERSRLDKRVAIATSAKLSRRMTS 127
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 560 AFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSL 420
AF+ EN+ FL A +++G+P F+ DL + VV C+ +L
Sbjct: 139 AFQYFENVRNFLVAAQEIGLPC---FEASDLEQGGKSARVVNCVLAL 182
>03_02_0314 + 7398247-7400877
Length = 876
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 407 GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQYGTNK 288
G G P GP++A N+ DFS ++K I +Q K
Sbjct: 804 GRAGIPHSGPEQAASNLFDFSPVRMKFESPAIDIQPAEEK 843
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 27.9 bits (59), Expect = 7.7
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNEL--QPGSVKKINQTTMAFKCME----NINAFLEAVKKLGVP 498
D+L L DG LLC + L P + + A ++ FL A +++G+P
Sbjct: 41 DDLRAALADGALLCAALRRLGCDPAAASDEGTGSAAAAAAAAGEGDVGRFLAAAERMGLP 100
Query: 497 AQETFQTIDLWERQNLYSVVVCLQSL 420
F DL + + SVV CL +L
Sbjct: 101 G---FSPSDL-DTGPVSSVVTCLLAL 122
>04_03_0996 + 21533874-21534469,21534963-21535041
Length = 224
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 388 PSGPRRRTRMCATSPRSS*KPVRT*YRYSTALTRASSRAYPSA 260
PS RRR R TSP S T S++ + +SS ++P A
Sbjct: 23 PSAARRRRRRLLTSPNPSVSSTSTSSSSSSSSSSSSSLSFPFA 65
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 320 SDRLSAAPRRSRAHSCPPPWARWTACRSYLPSYRGTVD--KRPPSKGSASPKDQWSGRSP 493
S L + RRSR+ S P + + RS P YR + +R S SPK + RSP
Sbjct: 107 SGGLGSGRRRSRSRSRSPRYRGRSRSRS--PRYRRSPSYGRRSYSPRDRSPKRRSYSRSP 164
Query: 494 ERARLAS 514
AR S
Sbjct: 165 PPARARS 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,357,140
Number of Sequences: 37544
Number of extensions: 417194
Number of successful extensions: 1337
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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