Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a10
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical pr... 152 2e-37
AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein. 152 2e-37
U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protei... 103 9e-23
AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin prot... 98 4e-21
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 95 3e-20
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 39 0.003
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 39 0.003
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 39 0.003
AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical ... 33 0.24
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 32 0.32
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 32 0.32
U04712-3|AAA81903.1| 357|Caenorhabditis elegans unc-87 protein. 30 1.7
U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein. 30 1.7
U04712-1|AAA81901.1| 374|Caenorhabditis elegans unc-87 protein. 30 1.7
U04711-2|AAA81900.1| 357|Caenorhabditis elegans unc-87 protein. 30 1.7
U04711-1|AAA81899.1| 374|Caenorhabditis elegans unc-87 protein. 30 1.7
AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated... 30 1.7
AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated... 30 1.7
AF106590-4|AAK68303.1| 374|Caenorhabditis elegans Uncoordinated... 30 1.7
Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z11126-7|CAO82061.1| 522|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z11126-6|CAA77471.2| 480|Caenorhabditis elegans Hypothetical pr... 29 3.9
U88170-3|AAB42247.1| 338|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93386-2|CAB07647.1| 387|Caenorhabditis elegans Hypothetical pr... 28 5.2
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 28 5.2
U50071-8|AAV34806.1| 795|Caenorhabditis elegans Uncoordinated p... 28 6.8
U50071-7|AAV34805.1| 905|Caenorhabditis elegans Uncoordinated p... 28 6.8
U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated p... 28 6.8
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p... 28 6.8
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p... 28 6.8
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 6.8
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr... 28 6.8
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr... 28 6.8
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 6.8
U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein. 28 6.8
U21732-1|AAA85853.1| 970|Caenorhabditis elegans UNC-44 protein. 28 6.8
U21731-1|AAA85852.1| 985|Caenorhabditis elegans UNC-44 protein. 28 6.8
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical pr... 27 9.1
U96695-1|AAB57697.1| 491|Caenorhabditis elegans deoxyuridinetri... 27 9.1
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 9.1
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 9.1
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 27 9.1
AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core alpha-6-... 27 9.1
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 9.1
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 9.1
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 9.1
AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl trans... 27 9.1
>Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical
protein F43G9.9 protein.
Length = 192
Score = 152 bits (369), Expect = 2e-37
Identities = 77/142 (54%), Positives = 104/142 (73%), Gaps = 2/142 (1%)
Frame = -2
Query: 665 DADNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQET 486
DADNL +V +DG+LLC L N L+PGSVKK+N + MAFK MENI+ FL+ ++ V E
Sbjct: 52 DADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAFKKMENISFFLKFAEEY-VQKSEL 110
Query: 485 FQTIDLWERQNLYSVVVCLQSLGRKA-GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVIS 309
FQT+DL+E Q+ +V++CL SL RK+ NFG+ +GPKEA + R++++EQLKAG NVI
Sbjct: 111 FQTVDLYEGQDPNAVLICLASLARKSEKNFGRSGLGPKEAQGDRREWTDEQLKAGHNVIG 170
Query: 308 LQYGTNKG-QQSGISFGNRRQM 246
LQ G+NKG SG++ GN R M
Sbjct: 171 LQMGSNKGATASGLNMGNTRHM 192
>AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein.
Length = 192
Score = 152 bits (369), Expect = 2e-37
Identities = 77/142 (54%), Positives = 104/142 (73%), Gaps = 2/142 (1%)
Frame = -2
Query: 665 DADNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQET 486
DADNL +V +DG+LLC L N L+PGSVKK+N + MAFK MENI+ FL+ ++ V E
Sbjct: 52 DADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAFKKMENISFFLKFAEEY-VQKSEL 110
Query: 485 FQTIDLWERQNLYSVVVCLQSLGRKA-GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVIS 309
FQT+DL+E Q+ +V++CL SL RK+ NFG+ +GPKEA + R++++EQLKAG NVI
Sbjct: 111 FQTVDLYEGQDPNAVLICLASLARKSEKNFGRSGLGPKEAQGDRREWTDEQLKAGHNVIG 170
Query: 308 LQYGTNKG-QQSGISFGNRRQM 246
LQ G+NKG SG++ GN R M
Sbjct: 171 LQMGSNKGATASGLNMGNTRHM 192
>U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protein 3
protein.
Length = 142
Score = 103 bits (248), Expect = 9e-23
Identities = 48/91 (52%), Positives = 64/91 (70%)
Frame = -2
Query: 665 DADNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQET 486
+ DN + +LKDGTLLCK N ++ GS+KK+ + F CMENINAF+E KK GVP +ET
Sbjct: 47 ERDNFHNLLKDGTLLCKAANGIEAGSIKKVQKPISTFACMENINAFVEFAKKQGVPNEET 106
Query: 485 FQTIDLWERQNLYSVVVCLQSLGRKAGNFGK 393
FQ+++L E ++L+SV V L SLGR GK
Sbjct: 107 FQSVELVEGRDLFSVCVTLLSLGRVLQKAGK 137
>AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin protein
4 protein.
Length = 154
Score = 98.3 bits (234), Expect = 4e-21
Identities = 50/100 (50%), Positives = 65/100 (65%)
Frame = -2
Query: 659 DNLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKKLGVPAQETFQ 480
DN E LKDG LCKLVN ++ GSVKKI + F C+ENIN F A + LGV +ETFQ
Sbjct: 52 DNFREQLKDGQRLCKLVNAIKAGSVKKIMKPISNFNCLENINQFSTAARSLGVKDEETFQ 111
Query: 479 TIDLWERQNLYSVVVCLQSLGRKAGNFGKPSIGPKEADKN 360
++DL++ ++L+SV V LQSL RK G PK+ K+
Sbjct: 112 SVDLFDGRDLFSVTVTLQSLARKVEKLG--ITPPKQVSKD 149
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 95.5 bits (227), Expect = 3e-20
Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 7/140 (5%)
Frame = -2
Query: 644 VLKDGTLLCKLVNELQPGSVKKINQTT-MAFKCMENINAFLEAVKKLGVPAQETFQTIDL 468
+LKDG +LCKL+ +L P N+ MAF MENI+ FL A K+ GV FQT+DL
Sbjct: 58 LLKDGVMLCKLIEKLDPSCRVVYNKKPKMAFPMMENISNFLAAAKQFGVMEISCFQTVDL 117
Query: 467 WERQNLYSVVVCLQSLG----RKAGNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQY 300
+E + Y V+ CL+ L ++ + P+ K A + R F E ++ G+ VI LQY
Sbjct: 118 YENKQCYKVIECLRLLAAVAQSRSSHLEHPAWVVKLAQSSPRQFPEAVMRRGEMVIPLQY 177
Query: 299 GTNK-GQQSGIS-FGNRRQM 246
GTNK Q G+S +G RQ+
Sbjct: 178 GTNKCASQKGMSPYGLPRQI 197
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = -2
Query: 641 LKDGTLLCKLVNELQPGSVKKINQTTMAF---KCMENINAFLEAVKKLGVPAQETFQTID 471
L DG LCK +N+L P S+ + T + + N++ FL+ +K+GVP +D
Sbjct: 548 LSDGQELCKFINKLHPESISLASSTDSSIATTRSKMNVDRFLQYCRKIGVPETTLCSQMD 607
Query: 470 LWERQN 453
+ ++N
Sbjct: 608 IISKRN 613
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -2
Query: 644 VLKDGTLLCKLVNELQPGSV--KKINQTTM--AFKCMENINAFLEAVKK-LGVPAQETFQ 480
VL+DG LLC+L N L P + KKI +T F C NIN F K + + F
Sbjct: 35 VLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDADLFT 94
Query: 479 TIDLWERQNLYSVVVCLQSL 420
DL+ V+ L L
Sbjct: 95 AEDLYYMNGFQKVLKTLSFL 114
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -2
Query: 644 VLKDGTLLCKLVNELQPGSV--KKINQTTM--AFKCMENINAFLEAVKK-LGVPAQETFQ 480
VL+DG LLC+L N L P + KKI +T F C NIN F K + + F
Sbjct: 67 VLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDADLFT 126
Query: 479 TIDLWERQNLYSVVVCLQSL 420
DL+ V+ L L
Sbjct: 127 AEDLYYMNGFQKVLKTLSFL 146
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -2
Query: 644 VLKDGTLLCKLVNELQPGSV--KKINQTTM--AFKCMENINAFLEAVKK-LGVPAQETFQ 480
VL+DG LLC+L N L P + KKI +T F C NIN F K + + F
Sbjct: 67 VLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDADLFT 126
Query: 479 TIDLWERQNLYSVVVCLQSL 420
DL+ V+ L L
Sbjct: 127 AEDLYYMNGFQKVLKTLSFL 146
>AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical
protein C46E10.3 protein.
Length = 392
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 298 PYCSDITF*PAFSCSSEKSRTFLSASLGPMDGLPKLPAFLP 420
P CS I F P+ + SS S + + L +D L K+P+F P
Sbjct: 229 PQCSVINFVPSLAISSLPSTSIPATILPKIDNLAKVPSFAP 269
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKK 510
+L+E + DG +L KL+ + + K N+ M + +EN+N L+ +KK
Sbjct: 74 DLFEDVGDGIMLMKLLEIISGDKLGKPNRGRMRVQKVENLNKVLDFLKK 122
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKK 510
+L+E + DG +L KL+ + + K N+ M + +EN+N L+ +KK
Sbjct: 74 DLFEDVGDGIMLMKLLEIISGDKLGKPNRGRMRVQKVENLNKVLDFLKK 122
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVKK 510
+L+E + DG +L KL+ + + K N+ M + +EN+N L+ +KK
Sbjct: 74 DLFEDVGDGIMLMKLLEIISGDKLGKPNRGRMRVQKVENLNKVLDFLKK 122
>U04712-3|AAA81903.1| 357|Caenorhabditis elegans unc-87 protein.
Length = 357
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Frame = -2
Query: 578 INQTTMAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGR---KA 408
I+QTT+ + N A + + G P E W+ + +V R +A
Sbjct: 218 IDQTTIPSQMGSNQYASQKGMTGFGQPRWEVLDPSISWQNRKSQGMVRLQSGTNRFASQA 277
Query: 407 GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQYGTNKG--QQSGISFGNRRQM 246
G G + + + E +K + +I Q G NKG Q+ SFG R +
Sbjct: 278 GMIGFGTCRNTTFEAEGGELPYEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 333
>U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein.
Length = 565
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Frame = -2
Query: 578 INQTTMAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGR---KA 408
I+QTT+ + N A + + G P E W+ + +V R +A
Sbjct: 426 IDQTTIPSQMGSNQYASQKGMTGFGQPRWEVLDPSISWQNRKSQGMVRLQSGTNRFASQA 485
Query: 407 GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQYGTNKG--QQSGISFGNRRQM 246
G G + + + E +K + +I Q G NKG Q+ SFG R +
Sbjct: 486 GMIGFGTCRNTTFEAEGGELPYEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 541
>U04712-1|AAA81901.1| 374|Caenorhabditis elegans unc-87 protein.
Length = 374
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Frame = -2
Query: 578 INQTTMAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGR---KA 408
I+QTT+ + N A + + G P E W+ + +V R +A
Sbjct: 235 IDQTTIPSQMGSNQYASQKGMTGFGQPRWEVLDPSISWQNRKSQGMVRLQSGTNRFASQA 294
Query: 407 GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQYGTNKG--QQSGISFGNRRQM 246
G G + + + E +K + +I Q G NKG Q+ SFG R +
Sbjct: 295 GMIGFGTCRNTTFEAEGGELPYEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 350
>U04711-2|AAA81900.1| 357|Caenorhabditis elegans unc-87 protein.
Length = 357
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Frame = -2
Query: 578 INQTTMAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGR---KA 408
I+QTT+ + N A + + G P E W+ + +V R +A
Sbjct: 218 IDQTTIPSQMGSNQYASQKGMTGFGQPRWEVLDPSISWQNRKSQGMVRLQSGTNRFASQA 277
Query: 407 GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQYGTNKG--QQSGISFGNRRQM 246
G G + + + E +K + +I Q G NKG Q+ SFG R +
Sbjct: 278 GMIGFGTCRNTTFEAEGGELPYEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 333
>U04711-1|AAA81899.1| 374|Caenorhabditis elegans unc-87 protein.
Length = 374
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Frame = -2
Query: 578 INQTTMAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGR---KA 408
I+QTT+ + N A + + G P E W+ + +V R +A
Sbjct: 235 IDQTTIPSQMGSNQYASQKGMTGFGQPRWEVLDPSISWQNRKSQGMVRLQSGTNRFASQA 294
Query: 407 GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQYGTNKG--QQSGISFGNRRQM 246
G G + + + E +K + +I Q G NKG Q+ SFG R +
Sbjct: 295 GMIGFGTCRNTTFEAEGGELPYEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 350
>AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated
protein 87, isoform c protein.
Length = 544
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Frame = -2
Query: 578 INQTTMAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGR---KA 408
I+QTT+ + N A + + G P E W+ + +V R +A
Sbjct: 405 IDQTTIPSQMGSNQYASQKGMTGFGQPRWEVLDPSISWQNRKSQGMVRLQSGTNRFASQA 464
Query: 407 GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQYGTNKG--QQSGISFGNRRQM 246
G G + + + E +K + +I Q G NKG Q+ SFG R +
Sbjct: 465 GMIGFGTCRNTTFEAEGGELPYEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 520
>AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated
protein 87, isoform a protein.
Length = 565
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Frame = -2
Query: 578 INQTTMAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGR---KA 408
I+QTT+ + N A + + G P E W+ + +V R +A
Sbjct: 426 IDQTTIPSQMGSNQYASQKGMTGFGQPRWEVLDPSISWQNRKSQGMVRLQSGTNRFASQA 485
Query: 407 GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQYGTNKG--QQSGISFGNRRQM 246
G G + + + E +K + +I Q G NKG Q+ SFG R +
Sbjct: 486 GMIGFGTCRNTTFEAEGGELPYEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 541
>AF106590-4|AAK68303.1| 374|Caenorhabditis elegans Uncoordinated
protein 87, isoform b protein.
Length = 374
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Frame = -2
Query: 578 INQTTMAFKCMENINAFLEAVKKLGVPAQETFQTIDLWERQNLYSVVVCLQSLGR---KA 408
I+QTT+ + N A + + G P E W+ + +V R +A
Sbjct: 235 IDQTTIPSQMGSNQYASQKGMTGFGQPRWEVLDPSISWQNRKSQGMVRLQSGTNRFASQA 294
Query: 407 GNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQYGTNKG--QQSGISFGNRRQM 246
G G + + + E +K + +I Q G NKG Q+ SFG R +
Sbjct: 295 GMIGFGTCRNTTFEAEGGELPYEAMKVSETIIPSQAGWNKGDSQKKMTSFGAPRDV 350
>Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical
protein C14C10.3a protein.
Length = 677
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +2
Query: 65 LEQPMYITLECNDDAVHCVI*SYVTLAGRRSSPFINNTHMKK 190
+ + + ++++C D+AVH V+ + + G+++ F+ KK
Sbjct: 579 VNKSVIVSVKCLDEAVHGVLDKFYGIGGQKTKKFVEKNIKKK 620
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +2
Query: 335 AAPRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPERARLAS 514
+APR + + P AR T RS P+ R V R + A+P + R+P AR A
Sbjct: 320 SAPRALTSRAPAGP-ARPTTTRSATPATRTAVPPRATAPPKAAPASKAPTRAPIPARSAP 378
Query: 515 *LPLGKRLCSP 547
P G +P
Sbjct: 379 APPRGAPAKAP 389
>Z11126-7|CAO82061.1| 522|Caenorhabditis elegans Hypothetical
protein ZK643.3b protein.
Length = 522
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = +2
Query: 248 FDACCRRICPTAGPC*CRTVAISRSDRLSAAPRRSRAHSCPPPWARWTACRSYLPSYRGT 427
FD + C A C CR + R+ +P CPP W W S P G
Sbjct: 115 FDLIVKDCCSAARYC-CRNTLVKYHHRVDDSP-------CPPTWDGWNCFDSATP---GV 163
Query: 428 VDKRPPS 448
V K+ P+
Sbjct: 164 VFKQCPN 170
>Z11126-6|CAA77471.2| 480|Caenorhabditis elegans Hypothetical
protein ZK643.3a protein.
Length = 480
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = +2
Query: 248 FDACCRRICPTAGPC*CRTVAISRSDRLSAAPRRSRAHSCPPPWARWTACRSYLPSYRGT 427
FD + C A C CR + R+ +P CPP W W S P G
Sbjct: 115 FDLIVKDCCSAARYC-CRNTLVKYHHRVDDSP-------CPPTWDGWNCFDSATP---GV 163
Query: 428 VDKRPPS 448
V K+ P+
Sbjct: 164 VFKQCPN 170
>U88170-3|AAB42247.1| 338|Caenorhabditis elegans Hypothetical
protein C10G11.7 protein.
Length = 338
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Frame = -2
Query: 638 KDGTLLCKLVNELQPGSVK----KINQTTMAFKCME--NINAF-LEAVKKLGVPA 495
KDG +L KL N L+PG+V+ + N A K ++ NI+AF A K LG A
Sbjct: 162 KDGDVLAKLANALEPGAVEVAAAEENADAAAQKEVQKKNIDAFGAWAQKTLGTEA 216
>Z93386-2|CAB07647.1| 387|Caenorhabditis elegans Hypothetical
protein R11H6.3 protein.
Length = 387
Score = 28.3 bits (60), Expect = 5.2
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +2
Query: 218 YFINRVIKITFDACCRRICPTAGPC*CRTVAISRS-DRLSAAPRRSRAHSCPPPWARWTA 394
YF++ V+ C R P A C TV +S DRL AAPRR + P R +
Sbjct: 261 YFVDHVV---IQDCVRGF-PEA--CRAWTVLVSSIVDRLRAAPRRGSFLNSPSSSRRGSM 314
Query: 395 CRSYLPSYRGTVDKRPPSKGSAS 463
C S S K P SA+
Sbjct: 315 CTSSQLSINDEAPKCPFMSKSAN 337
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 28.3 bits (60), Expect = 5.2
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Frame = +2
Query: 314 SRSDRLSAA--PRRSRAHSCPPPWARWTACRSYLPSYRGTVDKR---PPSKGSASPKDQW 478
SRS R S + PRRSR+ + PP + R P R R PP + SPK++
Sbjct: 123 SRSPRYSRSRSPRRSRSRTRSPP----SRDRRDSPDRRDNSRSRSRSPPPREDGSPKERR 178
Query: 479 S-----GRSPERAR 505
S RSP R+R
Sbjct: 179 SRSRSASRSPSRSR 192
>U50071-8|AAV34806.1| 795|Caenorhabditis elegans Uncoordinated
protein 44, isoform d protein.
Length = 795
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 428 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 480
>U50071-7|AAV34805.1| 905|Caenorhabditis elegans Uncoordinated
protein 44, isoform b protein.
Length = 905
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 538 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 590
>U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated
protein 44, isoform a protein.
Length = 2039
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 1442 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 1494
>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
protein 44, isoform e protein.
Length = 1841
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 1442 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 1494
>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
protein 44, isoform c protein.
Length = 1867
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 1442 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 1494
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 1448 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 1500
>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
protein.
Length = 1815
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 1448 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 1500
>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
protein.
Length = 1867
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 1442 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 1494
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 1448 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 1500
>U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.
Length = 1786
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 1448 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 1500
>U21732-1|AAA85853.1| 970|Caenorhabditis elegans UNC-44 protein.
Length = 970
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 545 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 597
>U21731-1|AAA85852.1| 985|Caenorhabditis elegans UNC-44 protein.
Length = 985
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 338 APRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPER 499
A + R+ + PP T S LP Y G + PP K +P +Q G + E+
Sbjct: 618 AEPKIRSDALPPQQPICTLAIS-LPEYTGEIKTAPPPKKDLTPFEQRYGSALEK 670
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.5 bits (58), Expect = 9.1
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 308 AISRSDRLSAAPRRSRAHSCPPPWARWTACRSYLPSY-RGTVDKR--PPSKGSASPKDQW 478
A SRS A RRS + S PP R R PS R KR PP++ SP
Sbjct: 364 AKSRSKSPPARRRRSPSASKSPPAPR----RRRSPSKSRSPAPKREIPPARRRRSPSASK 419
Query: 479 SGRSPERARLAS*LPLGKR 535
S +P+RA+ S P R
Sbjct: 420 SPPAPKRAKSRSKSPPAPR 438
>Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical
protein K07A1.2 protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -2
Query: 452 LYSVVVCLQSLGRKAGNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQ 303
+Y L++ R AG FG EA+ ++ EQ+K +++Q
Sbjct: 302 VYEAASELENTDRGAGGFGSTGQNTMEAEPALKKSKTEQIKTSATSVTIQ 351
>Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical
protein C14C10.3b protein.
Length = 674
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 89 LECNDDAVHCVI*SYVTLAGRRSSPFINNTHMKK 190
++C D+AVH V+ + + G+++ F+ KK
Sbjct: 584 IKCLDEAVHGVLDKFYGIGGQKTKKFVEKNIKKK 617
>U96695-1|AAB57697.1| 491|Caenorhabditis elegans
deoxyuridinetriphosphatase protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -2
Query: 452 LYSVVVCLQSLGRKAGNFGKPSIGPKEADKNVRDFSEEQLKAGQNVISLQ 303
+Y L++ R AG FG EA+ ++ EQ+K +++Q
Sbjct: 302 VYEAASELENTDRGAGGFGSTGQNTMEAEPALKKSKTEQIKTSATSVTIQ 351
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVK 513
+LY ++DG +L +L+ L + K M C+EN+ L+ ++
Sbjct: 63 DLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVK 513
+LY ++DG +L +L+ L + K M C+EN+ L+ ++
Sbjct: 63 DLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 335 AAPRRSRAHSCPPPWARWTACRSYLPSYRGTVDKRPPSKGSASPKDQWSGRSPERARLAS 514
AAP+ R + PPP R+ LP + ++ PS+ + PK + R PE A +
Sbjct: 556 AAPQEPR-RATPPP----EPLRNELPKHSDLLNVSKPSEPAEPPKPSDAPREPEVAAAEA 610
Query: 515 *LP 523
+P
Sbjct: 611 VIP 613
>AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core
alpha-6-fucosyltransferase protein.
Length = 559
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 98 NDDAVHCVI*SYVTLAGRRSSPFINNTHMKKYKKNIFNSFYFINRVIKITFDA 256
N+ + + V +AG + + T+ + YK+ +F S+ +N K F+A
Sbjct: 504 NNKEIDLKVGDKVGIAGNHWNGYSKGTNRQTYKEGVFPSYKVVNDWRKFKFEA 556
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVK 513
+LY ++DG +L +L+ L + K M C+EN+ L+ ++
Sbjct: 63 DLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVK 513
+LY ++DG +L +L+ L + K M C+EN+ L+ ++
Sbjct: 63 DLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 656 NLYEVLKDGTLLCKLVNELQPGSVKKINQTTMAFKCMENINAFLEAVK 513
+LY ++DG +L +L+ L + K M C+EN+ L+ ++
Sbjct: 63 DLYMDMRDGKMLLRLLAVLSGERLPKPTPGKMRIHCLENVEKGLQFLR 110
>AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl
transferase protein 8 protein.
Length = 559
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 98 NDDAVHCVI*SYVTLAGRRSSPFINNTHMKKYKKNIFNSFYFINRVIKITFDA 256
N+ + + V +AG + + T+ + YK+ +F S+ +N K F+A
Sbjct: 504 NNKEIDLKVGDKVGIAGNHWNGYSKGTNRQTYKEGVFPSYKVVNDWRKFKFEA 556
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,290
Number of Sequences: 27780
Number of extensions: 346063
Number of successful extensions: 1007
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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