Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a05
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 143 8e-35
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 143 8e-35
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 136 7e-33
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.69
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 0.91
08_02_0802 + 21386248-21387468 29 2.1
07_03_1296 + 25583195-25584385 29 2.1
01_05_0305 + 20659199-20660026,20660147-20660179 29 2.1
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 29 2.8
02_05_0460 - 29224525-29224620,29225525-29226625 28 3.7
12_02_0020 - 12388777-12389062,12389637-12389818 28 4.8
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 27 8.5
09_03_0062 - 11969719-11970036,11970115-11970843 27 8.5
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 27 8.5
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 27 8.5
03_06_0236 - 32545561-32546961 27 8.5
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 27 8.5
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 143 bits (346), Expect = 8e-35
Identities = 69/125 (55%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = -1
Query: 445 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 266
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 265 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 95
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 94 DRSAY 80
DR +
Sbjct: 120 DRPRF 124
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 143 bits (346), Expect = 8e-35
Identities = 69/125 (55%), Positives = 92/125 (73%), Gaps = 3/125 (2%)
Frame = -1
Query: 445 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 266
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 265 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGPVG-RPDAPARSAE 95
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R GP G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 94 DRSAY 80
DR +
Sbjct: 120 DRPRF 124
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 136 bits (330), Expect = 7e-33
Identities = 65/125 (52%), Positives = 90/125 (72%), Gaps = 3/125 (2%)
Frame = -1
Query: 445 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 266
M++ K+NR I +YLF EGV+ AKKDY+ KH +++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 265 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGPVG-RPDAPARSAE 95
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + GP G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 94 DRSAY 80
DR +
Sbjct: 120 DRPRF 124
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.69
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 415 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 239
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 238 TNEGIE-YLRIFLHLP 194
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 30.3 bits (65), Expect = 0.91
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = -1
Query: 316 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 146
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 145 VRRGP-----VGRPDAPARSAED 92
R+ + +P PA S +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>08_02_0802 + 21386248-21387468
Length = 406
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 9 SAEPGPTSAFLS*GATPGAAGVRLYADLSSAE-RAGASGRPTGPRRTVSVRTERLSVAGT 185
S P P+S F G V DLS A R + RP GPR + R E +++
Sbjct: 123 SGSPEPSSGFFVAVVVDGEM-VLAAGDLSDAAYRRTRARRPAGPRPVLLSRREHVAMRDA 181
Query: 186 ISGGR 200
GGR
Sbjct: 182 GRGGR 186
>07_03_1296 + 25583195-25584385
Length = 396
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = -1
Query: 205 LHLPPEIVPATLKRSVR--TETVRRGPVGRPDAPARSAEDRSAYRRTPA---APGVAPHD 41
LHL P PA +KRS R + + P DA R ++ A+ + AP +AP
Sbjct: 76 LHLQPNPDPAEVKRSYRRLSNLLSSNPRPGADAALRCVQEAFAHLSDSSANPAPALAPPP 135
Query: 40 KKADVGPGSA 11
A G SA
Sbjct: 136 APASGGDASA 145
>01_05_0305 + 20659199-20660026,20660147-20660179
Length = 286
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -1
Query: 205 LHLPPEI-----VPATLKRSVRTETVRRGPVG--RPDAPARSAEDRSAYRRTPAAPGVA 50
L LPP + A S+ TV GP G +P P + +++RR P+A GV+
Sbjct: 122 LKLPPRLQAAAAAAAAADSSLSPNTVLHGPYGGNKPPRPLTRSGSTASHRRKPSAVGVS 180
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 28.7 bits (61), Expect = 2.8
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = -1
Query: 484 SFLC*VSLQAAFKMLMPKQNRVAIYEYLFKEGVMVAK--KDYHAPKHTELEKIPNLQVIK 311
+FL V+ + F L + + Y+ ++ G VA +H PK K+ +
Sbjct: 151 AFLFLVTFSSLFCTLPLRNTMIVDYKLIYPSGSAVAGIVNSFHTPKGATKAKLQ----VN 206
Query: 310 AMQSLKSRGYVKEQFAWRHFYWYLT 236
AM KS V FAW F W+ T
Sbjct: 207 AM--FKS---VAGSFAWAFFQWFYT 226
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -1
Query: 133 PVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 11
PV APA AE S R P P PH A V SA
Sbjct: 270 PVSPASAPAALAESSSEELRPPPLPSSHPHAHAAAVVAASA 310
>12_02_0020 - 12388777-12389062,12389637-12389818
Length = 155
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 130 VGRPDAPARSAEDRSAYRRTPAAP 59
+GRP R E+RS +RTP+ P
Sbjct: 47 IGRPKGEGREWEERSRSQRTPSPP 70
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 146 CLCTY*ALKCCRHNFRRKVQEYSQVFNTLIG 238
CL Y +LK R+ ++ QE++ +F+ L G
Sbjct: 804 CLPAYPSLKVTRNQLQKITQEHASIFHILSG 834
>09_03_0062 - 11969719-11970036,11970115-11970843
Length = 348
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 223 QYPHWLGTSKSASRQ 267
Q+PHWLGT+ AS++
Sbjct: 172 QHPHWLGTAGYASKE 186
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 179 RHNFRRKVQEYSQVFNTLIG*VPVKVPPGKLFFDITSGLE 298
R+NFR KV+E S F + +G PP K+ D+ G++
Sbjct: 314 RNNFRAKVKEDSATFPSSLGMGRALSPP-KMSVDLEMGMK 352
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 27.1 bits (57), Expect = 8.5
Identities = 22/63 (34%), Positives = 23/63 (36%)
Frame = +3
Query: 9 SAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTI 188
S+ P SA TP AA A SS G SGR T P R S S T
Sbjct: 81 SSSPSTASAAARSSRTPSAAPGGTSARGSSTP-GGRSGRGTSPARAPSTSAPSTSPTATT 139
Query: 189 SGG 197
G
Sbjct: 140 RSG 142
>03_06_0236 - 32545561-32546961
Length = 466
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 121 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLN 2
P ++A D + RR PA G +K P S+DLN
Sbjct: 420 PPDDTKTAPDTAPVRRAPAVTGTRKKNKLRRGQPFSSDLN 459
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 50 CNTRGSRSTSVCRSVLSRAGWGIRTTNRATAYCL 151
C T ++ + + R WG R TNRAT + L
Sbjct: 327 CPTCLCTGMAMANNSIDRRAWGSRLTNRATLHIL 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,399,281
Number of Sequences: 37544
Number of extensions: 265224
Number of successful extensions: 901
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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