Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a05
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   137   4e-33
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    30   0.82 
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    28   3.3  
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   5.8  
AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  137 bits (332), Expect = 4e-33
 Identities = 73/136 (53%), Positives = 86/136 (63%), Gaps = 3/136 (2%)
 Frame = -1

Query: 445 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 266
           M +PK +   IYEYLF EGV VAKKD++A  H  +E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 265 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 86
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119

Query: 85  AYRR---TPAAPGVAP 47
           AYR    T A PG AP
Sbjct: 120 AYRTEKVTEAGPGGAP 135


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 136 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 47
           G V RP APAR A   +  R  PAAP   P
Sbjct: 33  GRVSRPAAPARGAPPAARGRPAPAAPANVP 62


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 124 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 8
           + D+ + S++D +  ++TPA     P  KKA+    S+D
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSD 470



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 124 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 8
           + D+ + S++D +  ++TPA     P  KKA+    S+D
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSD 317


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 136 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 8
           G   +P A ++ A+D SAY+RT        H +K +  PG +D
Sbjct: 82  GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116


>Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical
           protein C29F4.1 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 136 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 14
           GP G+P AP +   D       P  P   P    AD  PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -1

Query: 139 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 11
           +GP G+P  P +      A  R PA    AP    A   PG A
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQA 194


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -1

Query: 181  PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 38
            P T+  S RT +       R   PA+S ED S     PAAP  A   K
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -1

Query: 181  PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 38
            P T+  S RT +       R   PA+S ED S     PAAP  A   K
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435


>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 148 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 62
           T+   PVGR ++ ARS ++ SA R+ P +
Sbjct: 8   TIENTPVGRGNSGARSHKEPSAKRKKPTS 36


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 136 GPVGRPDAPARSAEDRSAYRRTPAAPGVA-PHDKKADVGPGSA 11
           GP G P AP    E  S   R+ ++PG A P       GP  A
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGA 188


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 136 GPVGRPDAPARSAEDRSAYRRTPAAPGVA-PHDKKADVGPGSA 11
           GP G P AP    E  S   R+ ++PG A P       GP  A
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGA 188


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 361 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 230
           AP   ++  +PNL   + ++S    GY+      + FYWY+ +E
Sbjct: 16  APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,188,609
Number of Sequences: 27780
Number of extensions: 230407
Number of successful extensions: 858
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)