Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt10a02
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 237 4e-63
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 48 4e-06
AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine re... 29 3.1
AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin... 28 5.4
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 27 7.1
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 27 7.1
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 27 7.1
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 27 7.1
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 27 7.1
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 27 7.1
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 27 7.1
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 27 7.1
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 27 7.1
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 27 7.1
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 27 7.1
AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine r... 27 7.1
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 27 7.1
Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 237 bits (580), Expect = 4e-63
Identities = 109/146 (74%), Positives = 130/146 (89%)
Frame = -2
Query: 480 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 301
MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 300 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 121
+LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I IA+IMR RS
Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120
Query: 120 MARYLSGSVKEILGTAQSVGCXCGGQ 43
MA+ L G+VKEILGTAQSVGC GQ
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQ 146
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -2
Query: 135 MRNRSMARYLSGSVKEILGTAQSVGCXCGGQ 43
MR RSMA+ L G+VKEILGTAQSVGC GQ
Sbjct: 1 MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQ 31
>AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein37 protein.
Length = 345
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 53 QXHPTDCAVPRISFTEPERYRAIDL 127
+ HPT CAV F +P +Y IDL
Sbjct: 289 ENHPTACAVSLFLFYDPYQYYLIDL 313
>AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin
protein 73 protein.
Length = 577
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 307 DLETLPVTCGLGNVITHLFRRQTKRTDFR 393
D ++LP+ C LG V+ + ++ TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 199 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 324
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 199 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 324
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 199 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 324
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 199 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 324
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 199 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 324
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 360 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 190
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 189 IKHNGNISLEDVIGIAKIMRNRSM 118
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 360 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 190
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 189 IKHNGNISLEDVIGIAKIMRNRSM 118
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 360 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 190
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 189 IKHNGNISLEDVIGIAKIMRNRSM 118
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 360 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 190
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 189 IKHNGNISLEDVIGIAKIMRNRSM 118
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 360 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 190
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 189 IKHNGNISLEDVIGIAKIMRNRSM 118
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 360 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 190
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 189 IKHNGNISLEDVIGIAKIMRNRSM 118
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine
receptor, class x protein12 protein.
Length = 305
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/31 (25%), Positives = 14/31 (45%)
Frame = +1
Query: 454 FIWVKLRGHFVDYLVQLYTIITLNPNGWVWI 546
F+W GH + Y + + +P W W+
Sbjct: 131 FVWSMAIGHVIPYFWRETCYVAYDPVSWTWV 161
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 199 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 324
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical
protein M01G12.6 protein.
Length = 419
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 383 VLLVCLLKRWVMTL 342
+L++CLLKRW M L
Sbjct: 180 ILMICLLKRWKMNL 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,606
Number of Sequences: 27780
Number of extensions: 291632
Number of successful extensions: 753
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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