Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a01
         (562 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538105-1|CAD98018.1|  427|Homo sapiens hypothetical protein pr...    31   3.7  
BC113399-1|AAI13400.1|  427|Homo sapiens GLDN protein protein.         30   4.8  
BC113397-1|AAI13398.1|  427|Homo sapiens GLDN protein protein.         30   4.8  
AY358144-1|AAQ88511.1|  427|Homo sapiens VDLC9339 protein.             30   4.8  
AK172756-1|BAD18742.1|  551|Homo sapiens protein ( Homo sapiens ...    30   4.8  
BC115006-1|AAI15007.1| 1437|Homo sapiens Wolf-Hirschhorn syndrom...    29   8.5  

>BX538105-1|CAD98018.1|  427|Homo sapiens hypothetical protein
           protein.
          Length = 427

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 429 GCGHVNYKNRLSF-KGG*AALFSFQFYFNKFQEVRL 325
           GCGHV Y N L + KGG   L  F+F     Q ++L
Sbjct: 247 GCGHVAYNNSLYYHKGGSNTLVRFEFGQETSQTLKL 282


>BC113399-1|AAI13400.1|  427|Homo sapiens GLDN protein protein.
          Length = 427

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 429 GCGHVNYKNRLSF-KGG*AALFSFQFYFNKFQEVRL 325
           GCGHV Y N L + KGG   L  F+F     Q ++L
Sbjct: 247 GCGHVVYNNSLYYHKGGSNTLVRFEFGQETSQTLKL 282


>BC113397-1|AAI13398.1|  427|Homo sapiens GLDN protein protein.
          Length = 427

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 429 GCGHVNYKNRLSF-KGG*AALFSFQFYFNKFQEVRL 325
           GCGHV Y N L + KGG   L  F+F     Q ++L
Sbjct: 247 GCGHVVYNNSLYYHKGGSNTLVRFEFGQETSQTLKL 282


>AY358144-1|AAQ88511.1|  427|Homo sapiens VDLC9339 protein.
          Length = 427

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 429 GCGHVNYKNRLSF-KGG*AALFSFQFYFNKFQEVRL 325
           GCGHV Y N L + KGG   L  F+F     Q ++L
Sbjct: 247 GCGHVVYNNSLYYHKGGSNTLVRFEFGQETSQTLKL 282


>AK172756-1|BAD18742.1|  551|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23917 fis, clone COL01191. ).
          Length = 551

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 429 GCGHVNYKNRLSF-KGG*AALFSFQFYFNKFQEVRL 325
           GCGHV Y N L + KGG   L  F+F     Q ++L
Sbjct: 371 GCGHVVYNNSLYYHKGGSNTLVRFEFGQETSQTLKL 406


>BC115006-1|AAI15007.1| 1437|Homo sapiens Wolf-Hirschhorn syndrome
           candidate 1-like 1 protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 88  QLSCRQRCPQRYHPGCYSV 32
           +L CR+ CP  +HP C S+
Sbjct: 922 RLLCRESCPASFHPECLSI 940


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,313,695
Number of Sequences: 237096
Number of extensions: 1011689
Number of successful extensions: 1273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)