Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt10a01
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.91 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   4.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 79  CRQRCPQRYHPGCYS 35
           C ++CP+R+ P C S
Sbjct: 106 CMRKCPRRHRPVCAS 120


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 509 VYPNGNQLSDCHFSILICCELN 444
           ++PNG+ L     S+ + C +N
Sbjct: 142 IFPNGSVLYSIRISLTLSCPMN 163


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 509 VYPNGNQLSDCHFSILICCELN 444
           ++PNG+ L     S+ + C +N
Sbjct: 142 IFPNGSVLYSIRISLTLSCPMN 163


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 542 VGQFAVSTQEHVYPN 498
           +G F +  Q H+YPN
Sbjct: 442 IGTFKLHRQPHIYPN 456


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 515 EHVYPNGNQLSDCHFSIL 462
           EH+  +G  L+DCH  ++
Sbjct: 305 EHLSVSGGALNDCHAEVV 322


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 330 RLTRKIAHAYTSNNLTIF*LKTLLKN*LV 244
           R TR I   Y ++N  +   KTL+KN +V
Sbjct: 74  RKTRIIDVVYNASNNELVRTKTLVKNAIV 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,781
Number of Sequences: 438
Number of extensions: 2170
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)