Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31056.Seq
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   9e-09
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  41   4e-04
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 56.4 bits (130), Expect = 9e-09
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +3

Query: 42  MAKPXGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 155
           M K   ++KG+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = +2

Query: 266 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 409
           NVP+          N+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 802 NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +2

Query: 266 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTE 391
           NVP+          N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 15  IXYTKLXMTMAKPXGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRK 185
           I  T   +  A    + K K  INEV+T  Y     + L      KR  R IKE+ +
Sbjct: 196 IDETASTLNFASRAKKIKNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKELEE 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,488
Number of Sequences: 59808
Number of extensions: 230082
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)